Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019637 Carpinus fangiana HOM05D001836 ORTHO05D043636 8.2e-70 266.9 133 100.0
QL09p044350 Quercus lobata HOM05D001836 ORTHO05D001519 6.8e-32 141.0 150 56.0
CiPaw.03G152600 Carya illinoinensis HOM05D001836 ORTHO05D001519 1.2e-31 140.2 149 55.0
CiPaw.04G107600 Carya illinoinensis HOM05D001836 ORTHO05D001519 3.8e-27 125.2 151 51.7
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 2.7e-25 119.0 154 53.2
Thecc.01G230500 Theobroma cacao HOM05D001836 ORTHO05D001519 1.2e-23 113.6 143 46.9
Gorai.001G184300 Gossypium raimondii HOM05D001836 ORTHO05D001519 2.0e-23 112.8 151 46.4
Gohir.D07G161100 Gossypium hirsutum HOM05D001836 ORTHO05D001519 2.6e-23 112.5 150 46.0
Manes.12G043500 Manihot esculenta HOM05D001836 ORTHO05D001519 1.3e-22 110.2 149 43.6
Duzib138G0071 Durio zibethinus HOM05D001836 ORTHO05D001519 2.8e-22 109.0 146 45.2
FAN24G0767 Fragaria x ananassa HOM05D001836 ORTHO05D001519 1.4e-21 106.7 140 45.7
Duzib133G0078 Durio zibethinus HOM05D001836 ORTHO05D001519 1.8e-21 106.3 143 48.3
FvH4_2g19630 Fragaria vesca HOM05D001836 ORTHO05D001519 2.4e-21 105.9 140 45.7
Haze_18885 Corylus avellana HOM05D001836 ORTHO05D043636 3.1e-21 105.5 138 55.1
Gohir.A07G154900 Gossypium hirsutum HOM05D001836 ORTHO05D001519 4.1e-21 105.1 151 44.4
Haze_24765 Corylus avellana HOM05D001836 ORTHO05D001519 5.4e-21 104.8 135 51.1
Cpa.g.sc8.187 Carica papaya HOM05D001836 ORTHO05D001519 9.1e-21 104.0 153 44.4
RcHm_v2.0_Chr6g0285371 Rosa chinensis HOM05D001836 ORTHO05D001519 2.0e-20 102.8 142 45.1
Sabra02G0191400 Salix brachista HOM05D001836 ORTHO05D001519 4.5e-20 101.7 140 40.7
Sp3g22420 Schrenkiella parvula HOM05D001836 ORTHO05D001519 4.5e-20 101.7 152 43.4
Potri.002G252000 Populus trichocarpa HOM05D001836 ORTHO05D001519 7.7e-20 100.9 141 46.1
BcaC01g03263 Brassica carinata HOM05D001836 ORTHO05D001519 1.7e-19 99.8 154 43.5
C03p54220 Brassica napus HOM05D001836 ORTHO05D001519 1.7e-19 99.8 154 43.5
BolC3t17707H Brassica oleracea HOM05D001836 ORTHO05D001519 1.7e-19 99.8 154 43.5
FAN15G2279 Fragaria x ananassa HOM05D001836 ORTHO05D001519 3.8e-19 98.6 153 41.2
FAN27G2966 Fragaria x ananassa HOM05D001836 ORTHO05D001519 3.8e-19 98.6 153 39.9
Glyma.08G357600 Glycine max HOM05D001836 ORTHO05D001519 5.0e-19 98.2 165 40.6
AL3G40270 Arabidopsis lyrata HOM05D001836 ORTHO05D001519 1.1e-18 97.1 151 43.0
Thhalv10003110m.g Eutrema salsugineum HOM05D001836 ORTHO05D001519 1.1e-18 97.1 150 42.0
Lj2A1135T40 Lonicera japonica HOM05D001836 ORTHO05D001519 1.1e-18 97.1 129 48.1
AT3G24650 Arabidopsis thaliana HOM05D001836 ORTHO05D001519 1.5e-18 96.7 151 43.7
CARHR100970 Cardamine hirsuta HOM05D001836 ORTHO05D001519 1.9e-18 96.3 152 41.4
MSTRG.21438 Avicennia marina HOM05D001836 ORTHO05D001519 2.5e-18 95.9 141 41.1
Actinidia09501 Actinidia chinensis HOM05D001836 ORTHO05D001519 3.3e-18 95.5 120 43.3
Aa31LG8G11820 Aethionema arabicum HOM05D001836 ORTHO05D001519 3.3e-18 95.5 146 45.2
BraA03t13518Z Brassica rapa HOM05D001836 ORTHO05D001519 3.3e-18 95.5 156 40.4
A03p43840 Brassica napus HOM05D001836 ORTHO05D001519 4.2e-18 95.1 157 40.1
BcaB03g14571 Brassica carinata HOM05D001836 ORTHO05D001519 7.2e-18 94.4 153 42.5
MD10G1169900 Malus domestica HOM05D001836 ORTHO05D001519 7.2e-18 94.4 161 41.6
Phvul.008G122100 Phaseolus vulgaris HOM05D001836 ORTHO05D001519 7.2e-18 94.4 165 41.8
Carub.0003s2505 Capsella rubella HOM05D001836 ORTHO05D001519 1.6e-17 93.2 152 41.4
MD05G1181100 Malus domestica HOM05D001836 ORTHO05D001519 1.6e-17 93.2 163 39.9
Actinidia23745 Actinidia chinensis HOM05D001836 ORTHO05D001519 2.8e-17 92.4 130 42.3
Migut.D00511 Erythranthe guttata HOM05D001836 ORTHO05D001519 3.6e-17 92.0 146 39.7
VMungo1383G1808 Vigna mungo HOM05D001836 ORTHO05D001519 3.6e-17 92.0 164 37.2
Sed0007968 Sechium edule HOM05D001836 ORTHO05D001519 4.7e-17 91.7 129 47.3
Glyma.18G176100 Glycine max HOM05D001836 ORTHO05D001519 6.1e-17 91.3 165 39.4
TAR633G1393 Trochodendron aralioides HOM05D001836 ORTHO05D001519 6.1e-17 91.3 118 47.5
ECA247G2651 Erigeron canadensis HOM05D001836 ORTHO05D001519 8.0e-17 90.9 131 38.9
Ciclev10019039m.g Citrus clementina HOM05D001836 ORTHO05D001519 2.3e-16 89.4 149 39.6
TWI14G0074 Tripterygium wilfordii HOM05D001836 ORTHO05D001519 5.2e-16 88.2 125 44.0
CANSAT01G2411 Cannabis sativa HOM05D001836 ORTHO05D001519 8.9e-16 87.4 171 36.8
arahy.Tifrunner.gnm1.ann1.PN7UB6 Arachis hypogaea HOM05D001836 ORTHO05D001519 2.6e-15 85.9 196 33.7
Eucgr.H00815 Eucalyptus grandis HOM05D001836 ORTHO05D001519 2.6e-15 85.9 152 39.5
HanXRQChr10g0280021 Helianthus annuus HOM05D001836 ORTHO05D001519 2.6e-15 85.9 111 42.3
PSO170G2943 Papaver somniferum HOM05D001836 ORTHO05D001519 2.6e-15 85.9 128 41.4
arahy.Tifrunner.gnm1.ann1.Z6Z4XE Arachis hypogaea HOM05D001836 ORTHO05D001519 4.4e-15 85.1 196 33.7
PSO764G0056 Papaver somniferum HOM05D001836 ORTHO05D001519 4.4e-15 85.1 127 40.9
Rhsim01G0258000 Rhododendron simsii HOM05D001836 ORTHO05D001519 4.4e-15 85.1 131 35.1
Cc01_g17380 Coffea canephora HOM05D001836 ORTHO05D001519 5.7e-15 84.7 139 38.8
ClCG09G009230 Citrullus lanatus HOM05D001836 ORTHO05D001519 7.5e-15 84.3 136 44.1
Lsat_1_v5_gn_9_12961 Lactuca sativa HOM05D001836 ORTHO05D001519 7.5e-15 84.3 140 35.0
Medtr7g059330 Medicago truncatula HOM05D001836 ORTHO05D001519 3.7e-14 82.0 180 34.4
Dinv19231 Davidia involucrata HOM05D001836 ORTHO05D001519 4.9e-14 81.6 122 38.5
HanXRQChr15g0468411 Helianthus annuus HOM05D001836 ORTHO05D001519 4.9e-14 81.6 113 38.9
DCAR_000539 Daucus carota HOM05D001836 ORTHO05D001519 6.3e-14 81.3 128 39.1
Manes.13G043500 Manihot esculenta HOM05D001836 ORTHO05D001519 6.3e-14 81.3 148 41.2
Nitab4.5_0001657g0040 Nicotiana tabacum HOM05D001836 ORTHO05D001519 6.3e-14 81.3 146 33.6
PSO384G2455 Papaver somniferum HOM05D001836 ORTHO05D001519 1.1e-13 80.5 121 41.3
Lj1g0008452 Lotus japonicus HOM05D001836 ORTHO05D001519 1.4e-13 80.1 159 37.1
PSO304G0014 Papaver somniferum HOM05D001836 ORTHO05D001519 1.4e-13 80.1 123 40.7
SalBow4G0480 Salvia bowleyana HOM05D001836 ORTHO05D001519 1.4e-13 80.1 108 43.5
Sed0013379 Sechium edule HOM05D001836 ORTHO05D001519 1.4e-13 80.1 138 39.1
Nitab4.5_0000813g0020 Nicotiana tabacum HOM05D001836 ORTHO05D001519 1.8e-13 79.7 147 35.4
SalBow4G1730 Salvia bowleyana HOM05D001836 ORTHO05D001519 1.8e-13 79.7 108 43.5
DCAR_004706 Daucus carota HOM05D001836 ORTHO05D001519 2.4e-13 79.3 116 43.1
TPR.G17645 Trifolium pratense HOM05D001836 ORTHO05D001519 2.4e-13 79.3 175 36.0
CSS0042217 Camellia sinensis var. sinensis HOM05D001836 ORTHO05D001519 4.1e-13 78.6 139 34.5
PGR083G0419 Punica granatum HOM05D001836 ORTHO05D001519 4.1e-13 78.6 170 35.9
TAR362G0407 Trochodendron aralioides HOM05D001836 ORTHO05D001519 5.4e-13 78.2 103 40.8
MELO3C021001.2 Cucumis melo HOM05D001836 ORTHO05D001519 7.0e-13 77.8 145 39.3
Psat3g142040 Pisum sativum HOM05D001836 ORTHO05D001519 7.0e-13 77.8 145 37.9
Ca_22686_v3 Cicer arietinum L. HOM05D001836 ORTHO05D001519 2.7e-12 75.9 169 36.1
Lalb_Chr01g0022481 Lupinus albus HOM05D001836 ORTHO05D001519 1.7e-11 73.2 194 32.5
Oeu015454.1 Olea europaea HOM05D001836 ORTHO05D001519 3.9e-11 72.0 122 36.1
Oeu015455.1 Olea europaea HOM05D001836 ORTHO05D001519 3.9e-11 72.0 122 36.1
Peaxi162Scf00052g00147 Petunia axillaris HOM05D001836 ORTHO05D001519 3.9e-11 72.0 131 32.1
Sc17g0002510 Simmondsia chinensis HOM05D001836 ORTHO05D001519 1.5e-10 70.1 140 36.4
Nn1g03112 Nelumbo nucifera HOM05D001836 ORTHO05D001519 3.3e-10 68.9 136 35.3
CAN.G771.55 Capsicum annuum HOM05D001836 ORTHO05D001519 9.5e-10 67.4 130 31.5
Aqoxy5G00059 Aquilegia oxysepala HOM05D001836 ORTHO05D001519 3.6e-09 65.5 169 32.0
Nitab4.5_0002085g0110 Nicotiana tabacum HOM05D001836 ORTHO05D001519 3.6e-09 65.5 109 38.5
arahy.Tifrunner.gnm1.ann1.6PZ1IJ Arachis hypogaea HOM05D001836 ORTHO05D001519 4.7e-09 65.1 157 36.3
Lalb_Chr03g0041991 Lupinus albus HOM05D001836 ORTHO05D001519 6.1e-09 64.7 202 28.7
arahy.Tifrunner.gnm1.ann1.4K8YXT Arachis hypogaea HOM05D001836 ORTHO05D001519 8.0e-09 64.3 158 35.4
CAN.G771.56 Capsicum annuum HOM05D001836 ORTHO05D001519 1.4e-08 63.5 103 35.9
MBI11_g04277_MAGBIO Magnolia biondii HOM05D001836 ORTHO05D001519 1.4e-08 63.5 108 37.0
Atru.chr5.1940 Acer truncatum HOM05D001836 ORTHO05D001519 6.8e-08 61.2 153 32.0
Lj1C82T1 Lonicera japonica HOM05D001836 ORTHO05D001519 6.8e-08 61.2 115 35.7
AUR62008894 Chenopodium quinoa HOM05D001836 ORTHO05D001519 5.8e-07 58.2 126 34.1
Nitab4.5_0006465g0030 Nicotiana tabacum HOM05D001836 ORTHO05D001519 5.8e-07 58.2 118 34.7
PGSC0003DMG400020155 Solanum tuberosum HOM05D001836 ORTHO05D001519 5.8e-07 58.2 105 36.2
Ah.08g214190 Amaranthus hybridus HOM05D000222 ORTHO05D004962 3.7e-06 55.5 123 34.1
AUR62031814 Chenopodium quinoa HOM05D001836 ORTHO05D001519 4.9e-06 55.1 145 29.7
Sopen06g034980 Solanum pennellii HOM05D001836 ORTHO05D001519 4.9e-06 55.1 117 33.3
Sopen06g034990 Solanum pennellii HOM05D001836 ORTHO05D001519 8.3e-06 54.3 110 30.9


User provided reference genes

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