Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 3.2e-305 1050.8 485 100.0
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 1.4e-284 982.2 499 93.0
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.4e-260 901.7 467 88.2
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 1.7e-253 879.0 450 88.4
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 3.4e-251 871.3 452 88.1
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 4.5e-251 870.9 462 85.9
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 4.5e-251 870.9 447 87.7
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 2.9e-250 868.2 443 88.5
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 2.1e-248 862.1 457 86.7
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.9e-247 857.8 452 86.1
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.1e-246 856.3 480 82.5
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 6.3e-245 850.5 450 87.1
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.1e-244 849.7 453 84.5
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 1.1e-244 849.7 469 82.3
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 3.1e-244 848.2 435 88.0
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.3e-244 847.4 449 86.4
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.6e-243 845.9 466 82.2
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 2.0e-243 845.5 449 86.0
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 3.5e-243 844.7 435 87.6
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 4.5e-243 844.3 435 87.6
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 7.7e-243 843.6 467 83.3
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 7.7e-243 843.6 459 84.1
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.0e-242 843.2 474 81.6
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 2.2e-242 842.0 450 84.2
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.9e-242 841.6 467 83.3
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 6.5e-242 840.5 471 80.7
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 6.5e-242 840.5 457 83.8
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.1e-241 839.7 449 84.2
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.1e-241 839.7 467 82.9
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 1.1e-241 839.7 450 85.6
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 1.9e-241 839.0 446 84.8
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.9e-241 839.0 440 85.2
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 7.2e-241 837.0 431 87.0
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 7.2e-241 837.0 445 84.7
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 9.4e-241 836.6 462 82.3
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 9.4e-241 836.6 454 83.9
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 1.6e-240 835.9 446 85.4
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 3.6e-240 834.7 455 83.5
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 4.0e-239 831.2 450 82.4
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 5.2e-239 830.9 465 81.7
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.8e-239 830.1 449 83.7
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 2.0e-238 828.9 457 83.4
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 2.6e-238 828.6 440 85.0
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 2.6e-238 828.6 449 83.5
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 5.7e-238 827.4 452 83.4
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 1.7e-237 825.9 475 80.6
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 2.2e-237 825.5 434 85.5
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.8e-237 824.3 459 81.9
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 6.3e-237 823.9 445 82.7
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 8.2e-237 823.5 436 84.9
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 1.1e-236 823.2 440 85.5
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 2.4e-236 822.0 441 84.6
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 2.4e-236 822.0 441 84.6
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 3.1e-236 821.6 438 84.2
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 7.7e-235 817.0 432 85.2
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 8.5e-234 813.5 442 83.7
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.1e-233 813.1 495 76.4
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.1e-233 813.1 495 76.4
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.9e-233 812.4 450 80.7
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.6e-232 809.3 458 79.0
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 2.7e-232 808.5 459 79.7
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 3.6e-232 808.1 442 82.1
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 6.1e-232 807.4 428 85.5
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.0e-232 807.0 488 77.0
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 4.0e-231 804.7 440 82.5
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 4.0e-231 804.7 440 82.5
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 5.2e-231 804.3 444 82.7
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 8.8e-231 803.5 432 84.0
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.2e-230 803.1 452 81.2
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.0e-230 802.4 431 83.3
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 5.7e-230 800.8 432 84.0
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 5.7e-230 800.8 452 80.5
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 5.7e-230 800.8 432 83.3
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 2.2e-229 798.9 443 82.2
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.8e-229 798.5 436 82.3
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.4e-228 795.4 451 80.0
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.1e-228 795.0 493 76.5
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 5.4e-228 794.3 465 79.1
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 7.0e-228 793.9 452 80.1
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.6e-227 792.7 453 79.7
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.6e-227 792.7 452 79.9
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 4.5e-227 791.2 431 82.8
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 4.5e-227 791.2 439 82.5
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 3.2e-225 785.0 448 78.8
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 1.8e-223 779.2 441 79.1
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.1e-220 768.5 432 78.7
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 5.9e-219 764.2 504 71.8
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.2e-216 756.5 446 76.9
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 5.7e-214 747.7 393 87.0
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.8e-212 742.7 393 86.0
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 2.0e-211 739.2 447 75.4
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 5.9e-211 737.6 439 76.1
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 4.3e-209 731.5 458 72.9
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 3.0e-202 708.8 397 79.6
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 5.2e-199 698.0 457 70.5
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 6.6e-194 681.0 436 70.6
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 7.3e-193 677.6 464 70.0
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 8.9e-191 670.6 417 72.2
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 1.2e-190 670.2 457 70.2
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 7.1e-188 661.0 424 74.5
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 2.5e-177 625.9 437 65.4
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.1e-171 606.3 305 89.5
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 6.0e-171 604.7 337 81.6
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 2.9e-165 585.9 312 84.3
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 9.3e-164 580.9 377 73.5
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 2.1e-163 579.7 464 60.3
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 2.1e-160 569.7 454 60.4
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.6e-155 553.5 300 83.7
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 6.1e-139 498.4 276 82.6
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.6e-83 314.3 196 76.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.0e-77 293.5 181 74.6
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 1.3e-72 278.1 243 58.0
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.1e-70 270.8 173 70.5
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 1.0e-69 268.5 436 41.5
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.0e-69 268.5 133 90.2
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.6e-69 265.8 132 87.1
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 1.4e-63 248.1 137 81.8
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 3.2e-63 246.9 216 61.6
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 5.4e-63 246.1 136 83.1
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.2e-62 245.0 120 90.0
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.7e-51 206.8 119 76.5
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 3.1e-50 203.8 119 80.7
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 3.0e-45 187.2 249 47.0
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.1e-31 142.1 102 63.7
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 3.8e-24 117.1 62 82.3
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 5.0e-24 116.7 182 40.7
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.5e-24 115.9 102 58.8
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.4e-23 112.5 86 59.3
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 1.0e-21 109.0 61 78.7
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.0e-21 109.0 105 54.3
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 2.5e-15 87.8 68 61.8
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 1.3e-08 65.5 43 65.1
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.9e-08 64.3 53 56.6


User provided reference genes

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