Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 4.2e-218 761.1 405 100.0
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 1.4e-189 666.4 422 88.6
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.1e-106 391.0 392 61.2
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 6.7e-91 338.6 442 53.8
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 4.8e-89 332.4 411 54.5
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 5.2e-83 312.4 464 46.6
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.9e-69 267.3 426 45.8
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.5e-66 257.7 413 48.2
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.5e-66 257.7 435 44.4
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 3.4e-66 256.5 418 46.7
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.4e-66 256.1 436 43.1
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 4.4e-66 256.1 430 45.6
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 9.8e-66 255.0 459 44.2
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.7e-65 254.2 435 43.2
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 6.3e-65 252.3 429 43.4
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 8.3e-65 251.9 401 48.1
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 8.3e-65 251.9 443 44.7
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.4e-64 251.1 410 45.4
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.8e-64 250.8 431 44.8
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 9.1e-64 248.4 386 47.4
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.6e-63 247.7 430 42.3
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 7.7e-63 245.4 459 42.5
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.0e-62 245.0 409 44.7
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.3e-62 244.6 409 46.0
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.1e-61 241.5 417 45.3
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 3.6e-60 236.5 425 42.4
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.8e-59 234.2 411 43.8
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 3.0e-59 233.4 387 46.3
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 2.6e-58 230.3 428 42.8
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 7.5e-58 228.8 443 47.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 3.7e-57 226.5 360 46.7
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 5.9e-55 219.2 453 40.6
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.7e-54 217.6 437 41.6
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.5e-53 213.8 426 43.4
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 3.6e-52 209.9 415 42.2
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 1.0e-51 208.4 417 39.3
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.3e-51 207.2 428 44.2
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 6.8e-51 205.7 440 40.2
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.5e-50 204.5 423 41.6
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.5e-50 204.5 406 39.9
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 5.8e-50 202.6 402 41.3
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 7.5e-50 202.2 403 41.2
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.3e-49 201.4 422 40.8
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.7e-49 201.1 415 41.2
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 2.9e-49 200.3 403 42.9
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 8.3e-49 198.7 428 38.6
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 8.3e-49 198.7 408 41.7
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 1.1e-48 198.4 366 42.9
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 1.4e-48 198.0 407 40.3
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.4e-48 198.0 398 41.7
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.2e-48 196.8 411 41.4
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.4e-48 196.1 431 39.4
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.6e-47 194.5 232 54.7
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 2.7e-47 193.7 397 40.8
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.0e-46 191.8 408 41.7
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.3e-46 190.7 449 36.1
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 6.6e-46 189.1 411 39.9
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.1e-45 188.3 411 40.1
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.3e-45 186.8 426 39.2
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 7.3e-45 185.7 411 37.0
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 3.6e-44 183.3 405 40.5
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 8.0e-44 182.2 409 39.6
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 8.0e-44 182.2 421 40.1
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 1.1e-43 181.8 359 40.1
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 1.4e-43 181.4 393 38.7
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 6.8e-43 179.1 415 39.0
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 6.8e-43 179.1 411 37.5
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 8.3e-41 172.2 391 39.6
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.1e-40 171.8 397 38.8
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.6e-39 167.9 365 40.0
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 1.6e-39 167.9 322 41.9
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 1.6e-39 167.9 408 37.3
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.6e-39 167.9 382 37.4
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.6e-39 167.9 422 38.9
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 2.7e-39 167.2 254 44.1
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 1.0e-38 165.2 377 37.9
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 1.3e-38 164.9 410 38.3
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 2.3e-38 164.1 402 39.3
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 3.9e-38 163.3 387 38.0
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 3.9e-38 163.3 409 37.2
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 6.6e-38 162.5 389 38.8
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.1e-37 161.8 424 37.7
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 4.3e-37 159.8 424 36.1
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 7.3e-37 159.1 386 37.8
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.6e-36 157.9 418 37.6
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 3.6e-36 156.8 386 38.9
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.8e-35 154.5 395 37.0
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 5.2e-35 152.9 430 36.7
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 6.8e-35 152.5 407 36.1
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 8.9e-35 152.1 418 39.0
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.4e-34 149.8 429 35.0
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.1e-32 145.2 431 35.5
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.4e-32 144.8 414 33.6
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.4e-32 144.8 422 34.4
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 3.2e-32 143.7 422 35.8
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 7.8e-31 139.0 297 37.7
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 3.9e-30 136.7 377 37.9
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 3.9e-30 136.7 385 35.6
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 5.1e-30 136.3 390 35.6
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 6.6e-30 136.0 386 35.5
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.9e-29 134.4 429 32.9
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.9e-29 134.4 227 45.4
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 2.5e-29 134.0 398 33.7
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 3.3e-29 133.7 257 40.1
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.1e-28 131.0 419 31.0
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 1.5e-26 124.8 304 36.8
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 9.9e-26 122.1 384 32.3
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 3.2e-24 117.1 228 40.4
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 9.2e-24 115.5 274 36.5
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.5e-23 113.6 301 35.2
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.0e-22 112.1 301 34.9
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 2.3e-22 110.9 412 31.6
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 2.3e-22 110.9 379 33.2
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 6.6e-22 109.4 267 37.8
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 1.5e-21 108.2 406 30.8
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 4.3e-21 106.7 385 31.4
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 1.8e-19 101.3 394 30.2
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 4.0e-19 100.1 254 36.2
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 9.9e-18 95.5 215 38.1
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.9e-17 93.2 238 37.4
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 4.2e-16 90.1 397 30.7
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 9.3e-16 89.0 475 27.2
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 9.3e-16 89.0 375 32.0
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 2.1e-15 87.8 209 35.4
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 2.7e-15 87.4 412 28.2
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 2.3e-14 84.3 400 29.2
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 6.6e-14 82.8 251 34.7
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 1.3e-12 78.6 426 28.9
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.6e-12 77.0 251 32.7
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 1.8e-11 74.7 371 29.1
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 2.4e-11 74.3 400 27.0
arahy.Tifrunner.gnm1.ann1.33PIHY Arachis hypogaea HOM05D009670 ORTHO05D010890 9.0e-11 72.4 260 30.8
arahy.Tifrunner.gnm1.ann1.81KKWU Arachis hypogaea HOM05D009670 ORTHO05D010890 9.0e-11 72.4 259 29.7
Lj6g0011843 Lotus japonicus HOM05D009670 ORTHO05D010890 9.9e-10 68.9 417 29.5
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 1.3e-09 68.6 182 33.5
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 2.2e-09 67.8 186 31.7
Glyma.15G079800 Glycine max HOM05D009670 ORTHO05D010890 1.4e-08 65.1 433 27.3
HanXRQChr17g0545011 Helianthus annuus HOM05D006105 ORTHO05D006345 2.4e-08 64.3 178 32.6
Cpa.g.sc7.22 Carica papaya HOM05D013066 ORTHO05D010890 1.2e-07 62.0 396 25.3
Potri.004G052900 Populus trichocarpa HOM05D058718 ORTHO05D010890 3.5e-07 60.5 410 25.1
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 4.6e-07 60.1 99 39.4
CANSAT35G1313 Cannabis sativa HOM05D009670 ORTHO05D010890 3.0e-06 57.4 415 23.4
MBI06_g46086_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 3.0e-06 57.4 91 48.4
Phvul.006G178900 Phaseolus vulgaris HOM05D009670 ORTHO05D010890 3.0e-06 57.4 408 28.9
Gohir.D10G030600 Gossypium hirsutum HOM05D013066 ORTHO05D010890 5.1e-06 56.6 412 26.2
Ca_00413_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 8.7e-06 55.8 260 28.1
Ca_30157_v3 Cicer arietinum L. HOM05D009670 ORTHO05D010890 8.7e-06 55.8 260 28.1
VMungo0540G1521 Vigna mungo HOM05D009670 ORTHO05D010890 8.7e-06 55.8 409 27.6


User provided reference genes

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