Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 1.5e-93 346.3 183 100.0
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 4.7e-84 314.7 183 86.9
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 1.9e-53 213.0 195 61.0
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 2.5e-45 186.0 200 53.5
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 9.6e-45 184.1 191 52.9
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 6.2e-44 181.4 191 52.9
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 1.8e-43 179.9 193 54.4
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 6.9e-43 177.9 193 53.9
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.2e-42 177.2 193 54.4
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 4.4e-42 175.3 196 52.6
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 1.7e-41 173.3 190 53.7
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 2.9e-41 172.6 190 51.6
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 1.9e-40 169.9 193 49.7
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 3.2e-40 169.1 185 56.2
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 1.6e-39 166.8 194 53.6
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.1e-39 166.4 189 50.8
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 2.7e-39 166.0 192 54.2
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 1.0e-38 164.1 195 52.8
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 1.3e-38 163.7 193 51.3
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 3.0e-38 162.5 193 47.7
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 3.9e-38 162.2 189 49.7
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 8.7e-38 161.0 190 51.1
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 1.3e-36 157.1 169 50.3
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 2.8e-36 156.0 195 49.7
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 2.8e-36 156.0 160 50.6
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 4.8e-36 155.2 189 47.6
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 6.2e-36 154.8 189 49.2
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 6.2e-36 154.8 189 49.2
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 6.2e-36 154.8 172 54.1
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 1.1e-35 154.1 196 42.9
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.4e-35 153.7 220 43.6
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 1.8e-35 153.3 180 47.2
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 2.4e-35 152.9 186 46.2
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 2.4e-35 152.9 215 42.8
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 2.4e-35 152.9 189 47.1
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 4.0e-35 152.1 189 48.1
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 5.3e-35 151.8 213 46.5
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 6.9e-35 151.4 211 44.1
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 2.0e-34 149.8 213 42.7
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 7.6e-34 147.9 186 47.3
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 2.2e-33 146.4 185 45.9
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 2.2e-33 146.4 190 45.3
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 3.8e-33 145.6 198 44.9
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 4.9e-33 145.2 219 41.1
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 8.4e-33 144.4 199 45.2
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 5.4e-32 141.7 170 47.6
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 7.9e-31 137.9 181 42.0
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 1.3e-30 137.1 185 44.3
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 1.8e-30 136.7 186 44.6
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 2.3e-30 136.3 183 44.3
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 3.9e-30 135.6 187 43.9
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 5.1e-30 135.2 186 44.1
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 6.7e-30 134.8 184 45.1
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 8.7e-30 134.4 223 40.4
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 1.1e-29 134.0 186 44.1
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 1.1e-29 134.0 224 41.5
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 1.5e-29 133.7 188 45.7
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 1.5e-29 133.7 186 43.0
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 1.9e-29 133.3 184 44.0
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 5.6e-29 131.7 171 44.4
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 2.1e-28 129.8 177 44.6
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 6.2e-28 128.3 181 43.1
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 1.4e-27 127.1 186 43.0
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 1.8e-27 126.7 186 43.5
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 4.0e-27 125.6 186 43.0
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 5.3e-27 125.2 181 41.4
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 9.0e-27 124.4 183 42.6
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 1.2e-26 124.0 186 43.5
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.2e-26 124.0 183 42.6
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 1.2e-26 124.0 226 38.5
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 1.2e-26 124.0 195 41.0
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 3.5e-23 112.5 206 39.8
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 7.9e-23 111.3 161 41.0
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 5.1e-22 108.6 156 40.4
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 3.3e-21 105.9 162 39.5
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 3.3e-21 105.9 157 37.6
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 7.4e-21 104.8 183 41.0
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 7.4e-21 104.8 160 37.5
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 1.6e-20 103.6 137 47.4
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 1.6e-20 103.6 166 40.4
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.6e-20 103.6 149 43.0
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 2.1e-20 103.2 172 39.5
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 2.8e-20 102.8 157 42.0
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.1e-19 100.9 163 38.7
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.8e-19 100.1 156 39.7
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 3.1e-19 99.4 166 40.4
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 3.1e-19 99.4 154 39.0
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 4.0e-19 99.0 161 37.9
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 1.2e-18 97.4 157 40.1
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.9e-17 92.0 149 40.3
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 1.0e-14 84.3 182 32.4
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 1.5e-13 80.5 155 38.7
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 1.2e-10 70.9 108 39.8
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 2.6e-10 69.7 85 44.7
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 1.3e-09 67.4 69 52.2
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 2.5e-08 63.2 58 53.4
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 5.5e-08 62.0 58 53.4
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 7.9e-07 58.2 29 86.2
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 1.4e-06 57.4 31 71.0
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 5.1e-06 55.5 42 52.4
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 6.7e-06 55.1 39 53.8


User provided reference genes

Program Settings