Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 1.4e-92 342.8 164 100.0
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 3.2e-84 315.1 166 93.4
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 7.2e-52 207.6 173 63.0
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 3.7e-40 168.7 174 54.6
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 8.6e-29 131.0 174 43.7
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 7.3e-28 127.9 164 45.1
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 2.1e-27 126.3 185 43.2
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 2.1e-27 126.3 139 50.4
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.8e-26 123.2 185 42.2
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.8e-26 123.2 173 39.9
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 8.9e-26 120.9 170 39.4
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 3.7e-24 115.5 180 42.2
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 4.9e-24 115.2 164 41.5
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 6.4e-24 114.8 167 40.7
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 4.1e-23 112.1 171 43.3
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 1.6e-22 110.2 154 40.9
TAR626G0317 Trochodendron aralioides HOM05D008142 ORTHO05D009674 2.1e-22 109.8 160 40.6
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 2.3e-21 106.3 166 42.2
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 3.0e-21 105.9 162 43.2
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 3.3e-20 102.4 165 42.4
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 3.3e-20 102.4 165 42.4
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 5.6e-20 101.7 181 41.4
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 1.2e-19 100.5 165 41.8
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 2.8e-19 99.4 162 38.3
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 2.4e-18 96.3 180 44.4
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 2.4e-18 96.3 159 40.3
ECA236G2480 Erigeron canadensis HOM05D002418 ORTHO05D002572 4.0e-18 95.5 164 36.6
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 6.8e-18 94.7 170 42.4
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 6.8e-18 94.7 174 43.7
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 1.5e-17 93.6 180 40.6
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 3.4e-17 92.4 155 43.2
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 1.1e-15 87.4 175 37.1
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.4e-15 87.0 177 36.7
Lsat_1_v5_gn_7_100541 Lactuca sativa HOM05D008142 ORTHO05D009674 4.6e-14 82.0 157 35.0
MBI07_g26359_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 4.6e-14 82.0 144 39.6
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 6.0e-14 81.6 150 36.0
Oeu020029.1 Olea europaea HOM05D008142 ORTHO05D009674 6.0e-14 81.6 164 36.6
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 1.7e-13 80.1 190 32.1
MD11G1276300 Malus domestica HOM05D015893 ORTHO05D019166 8.7e-13 77.8 186 33.9
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 1.1e-12 77.4 155 32.3
MD03G1255600 Malus domestica HOM05D015893 ORTHO05D019166 1.5e-12 77.0 157 33.8
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 5.6e-12 75.1 156 39.1
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 5.6e-12 75.1 162 38.9
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 9.6e-12 74.3 155 40.0
Aqoxy1G01721 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 1.2e-11 73.9 187 31.6
Oeu020030.1 Olea europaea HOM05D008142 ORTHO05D009674 1.2e-11 73.9 157 36.3
Potri.001G379300 Populus trichocarpa HOM05D015893 ORTHO05D009674 1.6e-11 73.6 167 35.3
THA.LOC104822599 Tarenaya hassleriana HOM05D010899 ORTHO05D012947 1.6e-11 73.6 155 32.3
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 2.8e-11 72.8 184 32.6
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 4.7e-11 72.0 162 37.0
Gorai.002G040400 Gossypium raimondii HOM05D023069 ORTHO05D009674 6.2e-11 71.6 133 37.6
MBI10_g02220_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 6.2e-11 71.6 140 35.7
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 1.8e-10 70.1 168 32.7
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.8e-10 70.1 155 38.7
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.4e-10 69.7 165 34.5
Gohir.D01G033300 Gossypium hirsutum HOM05D023069 ORTHO05D009674 5.2e-10 68.6 133 36.8
MSTRG.6725 Avicennia marina HOM05D008142 ORTHO05D009674 6.9e-10 68.2 178 33.1
Gohir.A01G042700 Gossypium hirsutum HOM05D023069 ORTHO05D009674 9.0e-10 67.8 133 36.1
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 9.0e-10 67.8 163 36.8
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 9.0e-10 67.8 180 33.9
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.2e-09 67.4 159 36.5
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.2e-09 67.4 162 34.6
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.5e-09 67.0 180 34.4
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 2.0e-09 66.6 141 37.6
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.0e-09 66.6 162 35.8
Sabra16G0249800 Salix brachista HOM05D008142 ORTHO05D009674 2.0e-09 66.6 147 33.3
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.6e-09 66.2 163 36.8
Thecc.07G144300 Theobroma cacao HOM05D023069 ORTHO05D009674 7.6e-09 64.7 131 35.1
DCAR_021049 Daucus carota HOM05D008142 ORTHO05D009674 9.9e-09 64.3 186 30.6
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.7e-08 63.5 161 33.5
Nitab4.5_0004038g0030 Nicotiana tabacum HOM05D026636 ORTHO05D022967 2.2e-08 63.2 144 37.5
Sp3g12830 Schrenkiella parvula HOM05D010899 ORTHO05D012947 4.9e-08 62.0 155 35.5
Ca_03397_v3 Cicer arietinum L. HOM05D012055 ORTHO05D014183 6.4e-08 61.6 167 29.3
Phvul.005G061600 Phaseolus vulgaris HOM05D012055 ORTHO05D014183 8.4e-08 61.2 171 32.7
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 8.4e-08 61.2 82 42.7
CARHR089520 Cardamine hirsuta HOM05D010899 ORTHO05D012947 1.4e-07 60.5 170 31.8
Nitab4.5_0000923g0030 Nicotiana tabacum HOM05D065472 ORTHO05D022967 1.9e-07 60.1 164 29.9
Glyma.15G248000 Glycine max HOM05D012055 ORTHO05D014183 2.4e-07 59.7 178 30.3
Cc05_g10420 Coffea canephora HOM05D011950 ORTHO05D009674 3.2e-07 59.3 176 30.7
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 5.4e-07 58.5 161 31.7
Sopen07g030160 Solanum pennellii HOM05D011950 ORTHO05D009674 9.3e-07 57.8 173 30.1
Migut.M00615 Erythranthe guttata HOM05D019704 ORTHO05D009674 1.2e-06 57.4 144 29.9
FvH4_3g16930 Fragaria vesca HOM05D015893 ORTHO05D019166 1.6e-06 57.0 182 29.7
FAN11G0710 Fragaria x ananassa HOM05D015893 ORTHO05D019166 1.6e-06 57.0 182 29.7
FAN16G3477 Fragaria x ananassa HOM05D015893 ORTHO05D019166 1.6e-06 57.0 182 29.7
Lalb_Chr25g0285461 Lupinus albus HOM05D012055 ORTHO05D014183 1.6e-06 57.0 170 32.9
Glyma.13G260000 Glycine max HOM05D012055 ORTHO05D014183 2.1e-06 56.6 177 31.6
Sc16g0007870 Simmondsia chinensis HOM05D008142 ORTHO05D009674 2.7e-06 56.2 171 32.2
RcHm_v2.0_Chr5g0028161 Rosa chinensis HOM05D015893 ORTHO05D019166 3.5e-06 55.8 183 30.1
COL.COLO4_17431 Corchorus olitorius HOM05D023069 ORTHO05D009674 4.6e-06 55.5 144 29.9
PGSC0003DMG401021252 Solanum tuberosum HOM05D011950 ORTHO05D009674 7.8e-06 54.7 163 28.2
Thecc.01G169400 Theobroma cacao HOM05D015934 ORTHO05D012532 7.8e-06 54.7 150 29.3


User provided reference genes

Program Settings