Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 2.7e-46 188.3 97 100.0
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.6e-38 162.5 97 88.7
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 6.9e-18 94.0 99 57.6
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 6.9e-18 94.0 99 58.6
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 9.0e-18 93.6 94 56.4
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 1.9e-15 85.9 96 51.0
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 2.5e-15 85.5 92 50.0
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 5.5e-15 84.3 92 52.2
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 5.5e-15 84.3 87 58.6
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 3.5e-14 81.6 87 52.9
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 4.6e-14 81.3 82 56.1
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 4.6e-14 81.3 87 52.9
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.0e-13 78.6 99 49.5
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.0e-13 78.6 99 49.5
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.9e-13 78.2 93 50.5
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.1e-12 76.6 91 50.5
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.1e-12 76.6 91 48.4
Lj3g0019101 Lotus japonicus HOM05D004022 ORTHO05D004090 1.5e-12 76.3 99 47.5
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.5e-12 75.5 100 47.0
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.3e-12 75.1 94 52.1
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 4.3e-12 74.7 89 48.3
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 4.3e-12 74.7 87 52.9
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 7.4e-12 73.9 86 48.8
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.3e-11 73.2 89 47.2
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.6e-11 72.8 88 45.5
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 2.2e-11 72.4 87 50.6
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 6.3e-11 70.9 84 46.4
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 8.2e-11 70.5 114 38.6
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 8.2e-11 70.5 114 41.2
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.4e-10 69.7 87 48.3
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.4e-10 69.7 113 40.7
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.8e-10 69.3 85 45.9
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.8e-10 69.3 114 38.6
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 1.8e-10 69.3 91 49.5
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 4.1e-10 68.2 104 40.4
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 5.3e-10 67.8 85 50.6
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 6.9e-10 67.4 95 45.3
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 6.9e-10 67.4 85 50.6
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 9.0e-10 67.0 86 43.0
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 9.0e-10 67.0 112 40.2
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 1.2e-09 66.6 116 40.5
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.2e-09 66.6 78 51.3
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 1.5e-09 66.2 115 40.0
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.5e-09 66.2 95 43.2
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.0e-09 65.9 113 39.8
CANSAT56G3333 Cannabis sativa HOM05D004022 ORTHO05D004090 2.6e-09 65.5 98 40.8
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.6e-09 65.5 89 41.6
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.6e-09 65.5 86 46.5
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 2.6e-09 65.5 82 47.6
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 2.6e-09 65.5 91 42.9
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 3.4e-09 65.1 80 50.0
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 7.6e-09 63.9 99 43.4
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 1.0e-08 63.5 121 38.0
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.0e-08 63.5 93 46.2
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.3e-08 63.2 90 44.4
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.3e-08 63.2 86 45.3
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.3e-08 63.2 104 40.4
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.7e-08 62.8 78 47.4
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 1.7e-08 62.8 78 47.4
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 1.7e-08 62.8 90 44.4
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.7e-08 62.8 99 39.4
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.2e-08 62.4 99 39.4
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 3.8e-08 61.6 90 44.4
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 3.8e-08 61.6 93 43.0
Sed0009467 Sechium edule HOM05D004022 ORTHO05D004090 3.8e-08 61.6 86 46.5
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 6.5e-08 60.8 87 42.5
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 8.5e-08 60.5 100 42.0
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 8.5e-08 60.5 96 43.8
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 8.5e-08 60.5 99 38.4
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 1.1e-07 60.1 123 38.2
Lalb_Chr19g0133591 Lupinus albus HOM05D004022 ORTHO05D004090 1.1e-07 60.1 95 43.2
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.4e-07 59.7 99 41.4
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.5e-07 58.9 96 42.7
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 2.5e-07 58.9 92 39.1
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.5e-07 58.9 92 41.3
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 3.2e-07 58.5 85 43.5
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.2e-07 58.2 85 43.5
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 4.2e-07 58.2 94 39.4
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 4.2e-07 58.2 95 42.1
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 5.5e-07 57.8 96 34.4
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 5.5e-07 57.8 98 38.8
Duzib235G0028 Durio zibethinus HOM05D004022 ORTHO05D004090 7.2e-07 57.4 105 36.2
Lalb_Chr20g0117911 Lupinus albus HOM05D012904 ORTHO05D004090 7.2e-07 57.4 99 36.4
Medtr6g042010 Medicago truncatula HOM05D004022 ORTHO05D004090 7.2e-07 57.4 92 41.3
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 9.3e-07 57.0 97 36.1
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 9.3e-07 57.0 109 38.5
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 9.3e-07 57.0 109 38.5
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 9.3e-07 57.0 109 38.5
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 9.3e-07 57.0 92 38.0
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.6e-06 56.2 100 39.0
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.6e-06 56.2 100 39.0
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 1.6e-06 56.2 105 37.1
MBI07_g23436_MAGBIO Magnolia biondii HOM05D004022 ORTHO05D004090 1.6e-06 56.2 85 41.2
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 2.1e-06 55.8 88 39.8
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 2.1e-06 55.8 88 39.8
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.1e-06 55.8 99 40.4
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 2.7e-06 55.5 88 38.6
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 2.7e-06 55.5 88 38.6
Migut.M00649 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.7e-06 55.5 78 38.5
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 2.7e-06 55.5 91 39.6
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 2.7e-06 55.5 85 37.6
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-06 55.1 88 38.6
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-06 55.1 90 43.3
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 3.6e-06 55.1 52 57.7
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 3.6e-06 55.1 67 44.8
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 3.6e-06 55.1 83 44.6
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 3.6e-06 55.1 81 42.0
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 4.6e-06 54.7 83 41.0
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 4.6e-06 54.7 34 73.5
Medtr6g041990 Medicago truncatula HOM05D004022 ORTHO05D004090 4.6e-06 54.7 79 40.5
Nn3g20788 Nelumbo nucifera HOM05D004022 ORTHO05D004090 4.6e-06 54.7 95 41.1
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 4.6e-06 54.7 93 40.9
Sed0018028 Sechium edule HOM05D024889 ORTHO05D004090 4.6e-06 54.7 77 39.0
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 6.1e-06 54.3 89 38.2
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 6.1e-06 54.3 84 36.9
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 7.9e-06 53.9 91 37.4
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 7.9e-06 53.9 52 57.7
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 7.9e-06 53.9 52 57.7
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 7.9e-06 53.9 87 40.2
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 7.9e-06 53.9 52 57.7
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 7.9e-06 53.9 52 57.7
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 7.9e-06 53.9 97 38.1
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 7.9e-06 53.9 91 39.6
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 7.9e-06 53.9 91 39.6
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 7.9e-06 53.9 90 40.0


User provided reference genes

Program Settings