Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019436 Carpinus fangiana HOM05D007055 ORTHO05D008943 2.3e-76 288.9 151 100.0
CiPaw.12G045200 Carya illinoinensis HOM05D007055 ORTHO05D008943 6.9e-57 224.2 151 80.8
Atru.chr12.2186 Acer truncatum HOM05D007055 ORTHO05D008943 4.5e-40 168.3 134 70.9
CSS0027098 Camellia sinensis var. sinensis HOM05D007055 ORTHO05D008943 3.2e-38 162.2 157 58.0
Ciclev10022701m.g Citrus clementina HOM05D007055 ORTHO05D008943 1.2e-37 160.2 149 63.1
Potri.011G144400 Populus trichocarpa HOM05D007055 ORTHO05D008943 1.0e-36 157.1 130 68.5
Sabra11G0128800 Salix brachista HOM05D007055 ORTHO05D008943 3.0e-36 155.6 103 77.7
PGR031G2131 Punica granatum HOM05D007055 ORTHO05D008943 5.1e-36 154.8 108 74.1
Psat1g002720 Pisum sativum HOM05D007055 ORTHO05D008943 6.7e-36 154.5 152 59.2
PSO541G2194 Papaver somniferum HOM05D007055 ORTHO05D008943 1.5e-35 153.3 120 64.2
Lalb_Chr25g0285111 Lupinus albus HOM05D007055 ORTHO05D008943 2.5e-35 152.5 137 63.5
PSO675G8693 Papaver somniferum HOM05D007055 ORTHO05D008943 2.5e-35 152.5 120 64.2
arahy.Tifrunner.gnm1.ann1.4D1XNM Arachis hypogaea HOM05D007055 ORTHO05D008943 3.3e-35 152.1 133 61.7
Potri.008G043200 Populus trichocarpa HOM05D007055 ORTHO05D008943 4.3e-35 151.8 128 64.1
Haze_08531 Corylus avellana HOM05D007055 ORTHO05D008943 7.4e-35 151.0 84 92.9
Ca_03690_v3 Cicer arietinum L. HOM05D007055 ORTHO05D008943 9.7e-35 150.6 152 57.9
Lj3g0013500 Lotus japonicus HOM05D007055 ORTHO05D008943 1.6e-34 149.8 144 59.7
Manes.06G171200 Manihot esculenta HOM05D007055 ORTHO05D008943 2.2e-34 149.4 155 59.4
Phvul.005G056000 Phaseolus vulgaris HOM05D007055 ORTHO05D008943 2.2e-34 149.4 105 76.2
RcHm_v2.0_Chr5g0026941 Rosa chinensis HOM05D007055 ORTHO05D008943 2.2e-34 149.4 133 60.2
arahy.Tifrunner.gnm1.ann1.FS1PG6 Arachis hypogaea HOM05D007055 ORTHO05D008943 2.8e-34 149.1 133 60.9
FvH4_3g16000 Fragaria vesca HOM05D007055 ORTHO05D008943 3.7e-34 148.7 142 59.9
Glyma.08G173000 Glycine max HOM05D007055 ORTHO05D008943 1.1e-33 147.1 137 61.3
Aqoxy1G01599 Aquilegia oxysepala HOM05D007055 ORTHO05D008943 1.4e-33 146.7 109 72.5
Rhsim06G0238300 Rhododendron simsii HOM05D007055 ORTHO05D008943 1.4e-33 146.7 105 73.3
Manes.06G170400 Manihot esculenta HOM05D007055 ORTHO05D008943 3.1e-33 145.6 151 58.9
Actinidia07345 Actinidia chinensis HOM05D007055 ORTHO05D008943 5.3e-33 144.8 96 78.1
FAN11G2295 Fragaria x ananassa HOM05D007055 ORTHO05D008943 1.2e-32 143.7 126 62.7
FAN21G0096 Fragaria x ananassa HOM05D007055 ORTHO05D008943 1.2e-32 143.7 126 62.7
Sc03g0007920 Simmondsia chinensis HOM05D007055 ORTHO05D008943 2.0e-32 142.9 159 57.9
Hma1.2p1_0151F.1_g066890 Hydrangea macrophylla HOM05D007055 ORTHO05D008943 2.6e-32 142.5 106 72.6
Lj5A202T45 Lonicera japonica HOM05D007055 ORTHO05D008943 2.6e-32 142.5 95 76.8
COL.COLO4_07385 Corchorus olitorius HOM05D007055 ORTHO05D008943 3.4e-32 142.1 138 60.1
FAN16G3461 Fragaria x ananassa HOM05D007055 ORTHO05D008943 4.5e-32 141.7 126 61.1
FAN21G3903 Fragaria x ananassa HOM05D007055 ORTHO05D008943 4.5e-32 141.7 126 61.9
Medtr2g069750 Medicago truncatula HOM05D007055 ORTHO05D008943 4.5e-32 141.7 144 59.0
MBI18_g28200_MAGBIO Magnolia biondii HOM05D007055 ORTHO05D008943 5.9e-32 141.4 96 77.1
CANSAT56G2639 Cannabis sativa HOM05D007055 ORTHO05D008943 7.7e-32 141.0 149 58.4
Thecc.09G245700 Theobroma cacao HOM05D007055 ORTHO05D008943 7.7e-32 141.0 143 56.6
Lsat_1_v5_gn_7_72120 Lactuca sativa HOM05D007055 ORTHO05D008943 1.3e-31 140.2 106 68.9
Sed0014529 Sechium edule HOM05D007055 ORTHO05D008943 1.3e-31 140.2 143 55.9
Cc05_g15950 Coffea canephora HOM05D007055 ORTHO05D008943 1.7e-31 139.8 127 59.1
Duzib168G0293 Durio zibethinus HOM05D007055 ORTHO05D008943 1.7e-31 139.8 111 67.6
Glyma.15G254500 Glycine max HOM05D007055 ORTHO05D008943 1.7e-31 139.8 126 63.5
Gohir.D05G076400 Gossypium hirsutum HOM05D007055 ORTHO05D008943 1.7e-31 139.8 149 57.0
TWI38G0074 Tripterygium wilfordii HOM05D007055 ORTHO05D008943 1.7e-31 139.8 137 62.0
DCAR_013747 Daucus carota HOM05D007055 ORTHO05D008943 2.9e-31 139.0 109 68.8
Solyc07g066370.3 Solanum lycopersicum HOM05D007055 ORTHO05D008943 3.8e-31 138.7 109 66.1
Gohir.A05G073500 Gossypium hirsutum HOM05D007055 ORTHO05D008943 5.0e-31 138.3 147 56.5
HanXRQChr13g0408571 Helianthus annuus HOM05D007055 ORTHO05D008943 6.5e-31 137.9 92 76.1
Nn7g37868 Nelumbo nucifera HOM05D007055 ORTHO05D008943 6.5e-31 137.9 144 54.2
MSTRG.22977 Avicennia marina HOM05D007055 ORTHO05D008943 1.1e-30 137.1 108 65.7
ECA240G0655 Erigeron canadensis HOM05D007055 ORTHO05D008943 1.1e-30 137.1 110 65.5
Sopen07g034550 Solanum pennellii HOM05D007055 ORTHO05D008943 1.1e-30 137.1 109 64.2
ATR1098G113 Amborella trichopoda HOM05D007055 ORTHO05D008943 2.5e-30 136.0 108 62.0
TAR627G0757 Trochodendron aralioides HOM05D007055 ORTHO05D008943 2.5e-30 136.0 105 67.6
MD05G1216100 Malus domestica HOM05D007055 ORTHO05D008943 9.4e-30 134.0 96 72.9
ClCG11G016330 Citrullus lanatus HOM05D007055 ORTHO05D008943 1.2e-29 133.7 108 66.7
PGSC0003DMG400022130 Solanum tuberosum HOM05D007055 ORTHO05D008943 1.2e-29 133.7 109 62.4
CsaV3_4G031800 Cucumis sativus L. HOM05D007055 ORTHO05D008943 1.6e-29 133.3 108 64.8
MELO3C010559.2 Cucumis melo HOM05D007055 ORTHO05D008943 2.1e-29 132.9 108 64.8
Gorai.009G077700 Gossypium raimondii HOM05D007055 ORTHO05D008943 2.7e-29 132.5 118 62.7
SalBow5G4782 Salvia bowleyana HOM05D000091 ORTHO05D003024 2.7e-29 132.5 111 62.2
Peaxi162Scf00232g01121 Petunia axillaris HOM05D007055 ORTHO05D008943 4.6e-29 131.7 116 58.6
Manes.06G170801 Manihot esculenta HOM05D007055 ORTHO05D008943 6.1e-29 131.3 109 66.1
Hund02291 Selenicereus undatus HOM05D007055 ORTHO05D008943 1.0e-28 130.6 153 48.4
Thhalv10019307m.g Eutrema salsugineum HOM05D007055 ORTHO05D008943 1.4e-28 130.2 104 64.4
Ah.06g187070 Amaranthus hybridus HOM05D007055 ORTHO05D008943 1.8e-28 129.8 100 68.0
CARHR072740 Cardamine hirsuta HOM05D007055 ORTHO05D008943 1.8e-28 129.8 106 64.2
GSVIVG01020441001 Vitis vinifera HOM05D007055 ORTHO05D008943 1.8e-28 129.8 93 74.2
SGA_v2.0_scaffold2G00966 Striga asiatica HOM05D007055 ORTHO05D008943 2.3e-28 129.4 115 58.3
Migut.H02189 Erythranthe guttata HOM05D007055 ORTHO05D008943 3.0e-28 129.0 110 60.0
AT1G79070 Arabidopsis thaliana HOM05D007055 ORTHO05D008943 3.9e-28 128.6 110 60.9
Manes.06G169900 Manihot esculenta HOM05D007055 ORTHO05D008943 8.8e-28 127.5 150 53.3
AL2G39530 Arabidopsis lyrata HOM05D007055 ORTHO05D008943 1.1e-27 127.1 118 57.6
THA.LOC104808116 Tarenaya hassleriana HOM05D007055 ORTHO05D008943 2.6e-27 125.9 99 64.6
Oeu002805.1 Olea europaea HOM05D007055 ORTHO05D008943 3.3e-27 125.6 97 66.0
BcaB02g08664 Brassica carinata HOM05D007055 ORTHO05D008943 5.7e-27 124.8 106 59.4
Sp5g34120 Schrenkiella parvula HOM05D007055 ORTHO05D008943 9.7e-27 124.0 125 57.6
AUR62044625 Chenopodium quinoa HOM05D007055 ORTHO05D008943 1.3e-26 123.6 85 70.6
CAN.G943.31 Capsicum annuum HOM05D007055 ORTHO05D008943 1.7e-26 123.2 98 64.3
EL10Ac4g08563 Beta vulgaris HOM05D007055 ORTHO05D008943 2.2e-26 122.9 115 58.3
BolC6t40312H Brassica oleracea HOM05D007055 ORTHO05D008943 2.2e-26 122.9 104 58.7
Duzib150G0143 Durio zibethinus HOM05D007055 ORTHO05D008943 2.8e-26 122.5 88 73.9
BcaC08g47470 Brassica carinata HOM05D007055 ORTHO05D008943 6.3e-26 121.3 104 57.7
A07p44210 Brassica napus HOM05D007055 ORTHO05D008943 6.3e-26 121.3 104 57.7
Eucgr.F03184 Eucalyptus grandis HOM05D007055 ORTHO05D008943 1.8e-25 119.8 93 67.7
C06p52940 Brassica napus HOM05D007055 ORTHO05D008943 2.4e-25 119.4 91 65.9
Carub.0002s2594 Capsella rubella HOM05D007055 ORTHO05D008943 5.3e-25 118.2 91 65.9
Nitab4.5_0001749g0090 Nicotiana tabacum HOM05D007055 ORTHO05D008943 5.3e-25 118.2 134 50.7
BraA07t31929Z Brassica rapa HOM05D007055 ORTHO05D008943 6.9e-25 117.9 91 64.8
BcaNung04909 Brassica carinata HOM05D007055 ORTHO05D008943 9.1e-25 117.5 92 64.1
AUR62043058 Chenopodium quinoa HOM05D007055 ORTHO05D008943 9.1e-25 117.5 145 46.9
unitig_699.g19681 Utricularia gibba HOM05D007055 ORTHO05D008943 9.1e-25 117.5 107 59.8
CDE12G0729 Ceratophyllum demersum HOM05D007055 ORTHO05D008943 1.2e-24 117.1 129 48.8
Prupe.4G143100 Prunus persica HOM05D007055 ORTHO05D008943 3.4e-24 115.5 95 65.3
Manes.06G170100 Manihot esculenta HOM05D007055 ORTHO05D008943 1.3e-23 113.6 88 68.2
Aa31LG4G1920 Aethionema arabicum HOM05D007055 ORTHO05D008943 1.4e-22 110.2 91 62.6
HPP92_002254 Vanilla planifolia HOM05D007055 ORTHO05D008943 4.2e-22 108.6 78 70.5
Pp3c15_3290 Physcomitrium patens HOM05D007055 ORTHO05D008943 1.4e-20 103.6 119 49.6
SHI01886 Sapria himalayana HOM05D007055 ORTHO05D008943 1.4e-20 103.6 101 54.5
Manes.06G171100 Manihot esculenta HOM05D007055 ORTHO05D008943 2.3e-20 102.8 74 71.6
BcaC08g45387 Brassica carinata HOM05D007055 ORTHO05D008943 3.3e-19 99.0 94 56.4
Mapoly0112s0058 Marchantia polymorpha HOM05D007055 ORTHO05D008943 4.4e-19 98.6 105 45.7
SalBow5G1530 Salvia bowleyana HOM05D000091 ORTHO05D003024 1.4e-17 93.6 78 64.1
CBR_g41533 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-17 92.0 93 49.5
TPR.G9749 Trifolium pratense HOM05D007055 ORTHO05D008943 5.3e-17 91.7 61 77.0
Zm00001eb173230 Zea mays HOM05D007055 ORTHO05D008943 7.0e-17 91.3 90 48.9
Os08g0129900 Oryza sativa ssp. japonica HOM05D007055 ORTHO05D008943 9.1e-17 90.9 104 45.2
vmacro11656 Vaccinium macrocarpon HOM05D007055 ORTHO05D008943 3.5e-16 89.0 54 83.3
Nitab4.5_0007742g0030 Nicotiana tabacum HOM05D007055 ORTHO05D008943 1.3e-15 87.0 127 44.9
SMO367G1177 Selaginella moellendorffii HOM05D007055 ORTHO05D008943 9.4e-14 80.9 90 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2782 Anthoceros agrestis HOM05D007055 ORTHO05D008943 1.8e-12 76.6 92 42.4
TPR.G3235 Trifolium pratense HOM05D007055 ORTHO05D008943 7.2e-06 54.7 77 44.2


User provided reference genes

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