Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019432 Carpinus fangiana HOM05D001532 ORTHO05D001402 3.1e-87 325.1 162 100.0
ClCG10G012730 Citrullus lanatus HOM05D001532 ORTHO05D001402 1.1e-15 87.4 97 51.5
MELO3C023929.2 Cucumis melo HOM05D001532 ORTHO05D001402 1.4e-15 87.0 97 51.5
CsaV3_3G032560 Cucumis sativus L. HOM05D001532 ORTHO05D001402 1.4e-15 87.0 97 51.5
Duzib093G0614 Durio zibethinus HOM05D001532 ORTHO05D001402 2.4e-15 86.3 89 49.4
Manes.10G152600 Manihot esculenta HOM05D001532 ORTHO05D001402 3.1e-15 85.9 97 49.5
Actinidia05842 Actinidia chinensis HOM05D001532 ORTHO05D001402 4.1e-15 85.5 89 49.4
Cpa.g.c26789.3 Carica papaya HOM05D001532 ORTHO05D001402 4.1e-15 85.5 104 46.2
Oeu060704.1 Olea europaea HOM05D001532 ORTHO05D001402 5.4e-15 85.1 81 51.9
RcHm_v2.0_Chr4g0404011 Rosa chinensis HOM05D001532 ORTHO05D001402 9.1e-15 84.3 82 52.4
RcHm_v2.0_Chr5g0065041 Rosa chinensis HOM05D001532 ORTHO05D001402 9.1e-15 84.3 82 52.4
TAR623G0472 Trochodendron aralioides HOM05D001532 ORTHO05D001402 1.2e-14 84.0 82 52.4
PSO339G4993 Papaver somniferum HOM05D001532 ORTHO05D001402 2.0e-14 83.2 82 52.4
Sed0007522 Sechium edule HOM05D001532 ORTHO05D001402 2.0e-14 83.2 97 49.5
unitig_61.g26436 Utricularia gibba HOM05D001532 ORTHO05D001402 2.0e-14 83.2 117 44.4
RcHm_v2.0_Chr1g0313211 Rosa chinensis HOM05D001532 ORTHO05D001402 2.7e-14 82.8 82 52.4
CiPaw.14G074900 Carya illinoinensis HOM05D001532 ORTHO05D001402 4.5e-14 82.0 82 52.4
COL.COLO4_29440 Corchorus olitorius HOM05D001532 ORTHO05D001402 4.5e-14 82.0 88 47.7
MD02G1319800 Malus domestica HOM05D001532 ORTHO05D001402 4.5e-14 82.0 82 53.7
unitig_0.g1367 Utricularia gibba HOM05D001532 ORTHO05D001402 4.5e-14 82.0 82 51.2
Atru.chr11.2710 Acer truncatum HOM05D001532 ORTHO05D001402 5.9e-14 81.6 89 47.2
Prupe.2G002300 Prunus persica HOM05D001532 ORTHO05D001402 5.9e-14 81.6 82 52.4
QL04p001582 Quercus lobata HOM05D001532 ORTHO05D001402 5.9e-14 81.6 79 53.2
SGA_v2.0_scaffold5G03105 Striga asiatica HOM05D001532 ORTHO05D001402 5.9e-14 81.6 81 53.1
BcaB01g03320 Brassica carinata HOM05D001532 ORTHO05D001402 7.7e-14 81.3 89 46.1
Eucgr.E01779 Eucalyptus grandis HOM05D001532 ORTHO05D001402 7.7e-14 81.3 89 48.3
Thecc.05G180700 Theobroma cacao HOM05D001532 ORTHO05D001402 7.7e-14 81.3 89 48.3
Migut.B01403 Erythranthe guttata HOM05D001532 ORTHO05D001402 1.0e-13 80.9 97 47.4
Gohir.A04G057000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 1.0e-13 80.9 89 44.9
Gohir.D04G094000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 1.0e-13 80.9 89 44.9
Gorai.009G393300 Gossypium raimondii HOM05D001532 ORTHO05D001402 1.0e-13 80.9 89 44.9
Phvul.011G181100 Phaseolus vulgaris HOM05D001532 ORTHO05D001402 1.3e-13 80.5 104 47.1
C03p29520 Brassica napus HOM05D001532 ORTHO05D001402 1.7e-13 80.1 89 46.1
FAN01G2178 Fragaria x ananassa HOM05D001532 ORTHO05D001402 1.7e-13 80.1 82 48.8
FAN01G2635 Fragaria x ananassa HOM05D001532 ORTHO05D001402 1.7e-13 80.1 82 48.8
PSO801G0571 Papaver somniferum HOM05D001532 ORTHO05D001402 1.7e-13 80.1 82 51.2
Sabra16G0138600 Salix brachista HOM05D001532 ORTHO05D001402 1.7e-13 80.1 81 49.4
Dinv43942 Davidia involucrata HOM05D001532 ORTHO05D001402 2.2e-13 79.7 82 47.6
FvH4_7g00040 Fragaria vesca HOM05D001532 ORTHO05D001402 2.2e-13 79.7 82 48.8
FAN03G1035 Fragaria x ananassa HOM05D001532 ORTHO05D001402 2.2e-13 79.7 82 48.8
FAN06G0369 Fragaria x ananassa HOM05D001532 ORTHO05D001402 2.2e-13 79.7 82 48.8
FAN10G0410 Fragaria x ananassa HOM05D001532 ORTHO05D001402 2.2e-13 79.7 82 48.8
Glyma.15G217700 Glycine max HOM05D001532 ORTHO05D001402 2.2e-13 79.7 104 46.2
VMungo1127G1150 Vigna mungo HOM05D001532 ORTHO05D001402 2.2e-13 79.7 82 52.4
AL4G43270 Arabidopsis lyrata HOM05D001532 ORTHO05D001402 2.9e-13 79.3 89 44.9
Ca_11281_v3 Cicer arietinum L. HOM05D001532 ORTHO05D001402 2.9e-13 79.3 79 49.4
Ciclev10033019m.g Citrus clementina HOM05D001532 ORTHO05D001402 2.9e-13 79.3 89 46.1
Dinv43501 Davidia involucrata HOM05D000126 ORTHO05D001402 2.9e-13 79.3 82 50.0
Hma1.2p1_0541F.1_g174820 Hydrangea macrophylla HOM05D001532 ORTHO05D001402 2.9e-13 79.3 82 48.8
Solyc01g073710.2 Solanum lycopersicum HOM05D001532 ORTHO05D001402 2.9e-13 79.3 97 46.4
ECA236G3146 Erigeron canadensis HOM05D001532 ORTHO05D001402 3.8e-13 79.0 82 45.1
Potri.001G231100 Populus trichocarpa HOM05D001532 ORTHO05D001402 5.0e-13 78.6 82 47.6
TWI09G0577 Tripterygium wilfordii HOM05D001532 ORTHO05D001402 5.0e-13 78.6 97 44.3
vmacro13607 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 5.0e-13 78.6 89 44.9
BolC3t15301H Brassica oleracea HOM05D001532 ORTHO05D001402 6.5e-13 78.2 89 44.9
BraA03t11682Z Brassica rapa HOM05D001532 ORTHO05D001402 6.5e-13 78.2 89 44.9
CSS0029713 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 6.5e-13 78.2 89 44.9
CAN.G129.51 Capsicum annuum HOM05D001532 ORTHO05D001402 6.5e-13 78.2 89 46.1
Lj9P619T33 Lonicera japonica HOM05D001532 ORTHO05D001402 6.5e-13 78.2 79 50.6
Peaxi162Scf00402g00084 Petunia axillaris HOM05D001532 ORTHO05D001402 6.5e-13 78.2 78 48.7
Lsat_1_v5_gn_7_33641 Lactuca sativa HOM05D001532 ORTHO05D001402 1.1e-12 77.4 82 45.1
Aa31LG1G25920 Aethionema arabicum HOM05D001343 ORTHO05D002008 1.9e-12 76.6 79 48.1
Psat4g142600 Pisum sativum HOM05D001532 ORTHO05D001402 1.9e-12 76.6 85 48.2
PGR142G1780 Punica granatum HOM05D001532 ORTHO05D001402 1.9e-12 76.6 88 43.2
SalBow5G4956 Salvia bowleyana HOM05D001532 ORTHO05D001402 1.9e-12 76.6 79 49.4
PGSC0003DMG400028985 Solanum tuberosum HOM05D001532 ORTHO05D001402 1.9e-12 76.6 82 48.8
vmacro13606 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 1.9e-12 76.6 80 47.5
vmacro22464 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 1.9e-12 76.6 80 47.5
EL10Ac7g16472 Beta vulgaris HOM05D001532 ORTHO05D001402 2.5e-12 76.3 89 48.3
Nn2g15744 Nelumbo nucifera HOM05D001532 ORTHO05D001402 2.5e-12 76.3 79 48.1
THA.LOC104817147 Tarenaya hassleriana HOM05D001532 ORTHO05D001402 2.5e-12 76.3 89 43.8
AT2G44310 Arabidopsis thaliana HOM05D001532 ORTHO05D001402 3.2e-12 75.9 89 43.8
BcaC01g05176 Brassica carinata HOM05D001532 ORTHO05D001402 3.2e-12 75.9 89 43.8
A03p24750 Brassica napus HOM05D001532 ORTHO05D001402 3.2e-12 75.9 89 43.8
Nitab4.5_0000468g0100 Nicotiana tabacum HOM05D001532 ORTHO05D001402 3.2e-12 75.9 82 47.6
Nitab4.5_0002319g0010 Nicotiana tabacum HOM05D001532 ORTHO05D001402 3.2e-12 75.9 82 47.6
Lj3g0006104 Lotus japonicus HOM05D001532 ORTHO05D001402 4.2e-12 75.5 82 48.8
Nn7g35962 Nelumbo nucifera HOM05D001532 ORTHO05D001402 4.2e-12 75.5 82 46.3
Medtr8g446810 Medicago truncatula HOM05D001532 ORTHO05D001402 5.5e-12 75.1 79 48.1
Rhsim07G0049600 Rhododendron simsii HOM05D001532 ORTHO05D001402 7.2e-12 74.7 82 47.6
Aqoxy1G00154 Aquilegia oxysepala HOM05D001532 ORTHO05D001402 9.5e-12 74.3 81 45.7
MSTRG.28102 Avicennia marina HOM05D001532 ORTHO05D001402 9.5e-12 74.3 79 46.8
Carub.0004s2690 Capsella rubella HOM05D001532 ORTHO05D001402 9.5e-12 74.3 89 42.7
Lj7P562T18 Lonicera japonica HOM05D001532 ORTHO05D001402 9.5e-12 74.3 97 43.3
AUR62001423 Chenopodium quinoa HOM05D001532 ORTHO05D001402 1.2e-11 73.9 83 50.6
CSS0002101 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 1.6e-11 73.6 89 43.8
Dinv06817 Davidia involucrata HOM05D001532 ORTHO05D001402 1.6e-11 73.6 83 44.6
Sopen01g033280 Solanum pennellii HOM05D001532 ORTHO05D001402 1.6e-11 73.6 82 47.6
CARHR139480 Cardamine hirsuta HOM05D001532 ORTHO05D001402 2.1e-11 73.2 89 41.6
AUR62009947 Chenopodium quinoa HOM05D001532 ORTHO05D001402 2.1e-11 73.2 83 49.4
arahy.Tifrunner.gnm1.ann1.M3EH65 Arachis hypogaea HOM05D001532 ORTHO05D001402 2.7e-11 72.8 82 48.8
CSS0009032 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 2.7e-11 72.8 89 43.8
MBI13_g29648_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 2.7e-11 72.8 82 47.6
MBI13_g42369_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 2.7e-11 72.8 82 47.6
Thhalv10001674m.g Eutrema salsugineum HOM05D001532 ORTHO05D001402 3.6e-11 72.4 89 41.6
Lsat_1_v5_gn_8_151781 Lactuca sativa HOM05D001532 ORTHO05D001402 6.1e-11 71.6 82 42.7
CSS0020845 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 8.0e-11 71.2 89 42.7
Sp4g26380 Schrenkiella parvula HOM05D001532 ORTHO05D001402 8.0e-11 71.2 89 41.6
MSTRG.28103 Avicennia marina HOM05D001532 ORTHO05D001402 1.8e-10 70.1 79 44.3
Gohir.D01G188900 Gossypium hirsutum HOM05D001532 ORTHO05D001402 2.3e-10 69.7 82 43.9
Gorai.002G232400 Gossypium raimondii HOM05D001532 ORTHO05D001402 2.3e-10 69.7 82 43.9
MSTRG.28101 Avicennia marina HOM05D001532 ORTHO05D001402 3.0e-10 69.3 72 47.2
Gohir.A01G198700 Gossypium hirsutum HOM05D001532 ORTHO05D001402 3.0e-10 69.3 82 43.9
MD14G1000900 Malus domestica HOM05D001532 ORTHO05D001402 4.0e-10 68.9 47 68.1
Lsat_1_v5_gn_1_56441 Lactuca sativa HOM05D001532 ORTHO05D001402 1.2e-09 67.4 82 39.0
CDE05G3642 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 1.5e-09 67.0 79 43.0
ATR0598G207 Amborella trichopoda HOM05D001532 ORTHO05D001402 2.0e-09 66.6 81 46.9
CDE05G2849 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 2.0e-09 66.6 79 43.0
Dinv14886 Davidia involucrata HOM05D001532 ORTHO05D001402 2.6e-09 66.2 44 65.9
Dinv44677 Davidia involucrata HOM05D001488 ORTHO05D001456 3.4e-09 65.9 81 44.4
Dinv03670 Davidia involucrata HOM05D001532 ORTHO05D001402 5.7e-09 65.1 74 45.9
DCAR_029589 Daucus carota HOM05D001532 ORTHO05D001402 9.8e-09 64.3 97 37.1
Dinv29729 Davidia involucrata HOM05D001532 ORTHO05D001402 9.8e-09 64.3 44 63.6
Lsat_1_v5_gn_4_42441 Lactuca sativa HOM05D001532 ORTHO05D001402 1.3e-08 63.9 82 40.2
Lalb_Chr03g0032001 Lupinus albus HOM05D001532 ORTHO05D001402 2.8e-08 62.8 62 56.5
ECA234G3020 Erigeron canadensis HOM05D001532 ORTHO05D001402 3.7e-08 62.4 82 40.2
ECA236G2154 Erigeron canadensis HOM05D001532 ORTHO05D001402 3.7e-08 62.4 83 43.4
Nitab4.5_0000068g0190 Nicotiana tabacum HOM05D001532 ORTHO05D001402 4.9e-08 62.0 79 45.6
ATR0598G352 Amborella trichopoda HOM05D001532 ORTHO05D001402 6.3e-08 61.6 89 41.6
Dinv36007 Davidia involucrata HOM05D001532 ORTHO05D001402 6.3e-08 61.6 111 37.8
Duzib133G0035 Durio zibethinus HOM05D001532 ORTHO05D001402 8.3e-08 61.2 79 41.8
Mapoly0031s0092 Marchantia polymorpha HOM05D001532 ORTHO05D001402 8.3e-08 61.2 82 37.8
AagrBONN_evm.TU.Sc2ySwM_117.2724 Anthoceros agrestis HOM05D001532 ORTHO05D001402 1.1e-07 60.8 81 40.7
Dinv35137 Davidia involucrata HOM05D001532 ORTHO05D001402 1.1e-07 60.8 44 56.8
Potri.014G161200 Populus trichocarpa HOM05D001532 ORTHO05D001402 1.1e-07 60.8 76 42.1
Manes.13G063982 Manihot esculenta HOM05D001532 ORTHO05D001402 1.4e-07 60.5 76 42.1
Manes.13G064036 Manihot esculenta HOM05D001532 ORTHO05D001402 1.4e-07 60.5 76 42.1
TPR.G27881 Trifolium pratense HOM05D001532 ORTHO05D001402 1.4e-07 60.5 79 43.0
THA.LOC104801017 Tarenaya hassleriana HOM05D001532 ORTHO05D001402 1.8e-07 60.1 79 38.0
ECA236G1656 Erigeron canadensis HOM05D001532 ORTHO05D001402 2.4e-07 59.7 47 57.4
CSS0044521 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 3.1e-07 59.3 46 54.3
Glyma.14G051800 Glycine max HOM05D001532 ORTHO05D001402 3.1e-07 59.3 77 39.0
HanXRQChr16g0508281 Helianthus annuus HOM05D001532 ORTHO05D001402 3.1e-07 59.3 103 35.9
Lsat_1_v5_gn_7_94500 Lactuca sativa HOM05D001532 ORTHO05D001402 3.1e-07 59.3 47 55.3
Manes.13G064300 Manihot esculenta HOM05D001532 ORTHO05D001402 3.1e-07 59.3 76 42.1
arahy.Tifrunner.gnm1.ann1.42MJWH Arachis hypogaea HOM05D001532 ORTHO05D001402 4.1e-07 58.9 82 32.9
arahy.Tifrunner.gnm1.ann1.XIVB9A Arachis hypogaea HOM05D001532 ORTHO05D001402 4.1e-07 58.9 80 35.0
Glyma.02G265900 Glycine max HOM05D001532 ORTHO05D001402 4.1e-07 58.9 77 37.7
Manes.13G064009 Manihot esculenta HOM05D001532 ORTHO05D001402 4.1e-07 58.9 76 40.8
Pp3c27_7790 Physcomitrium patens HOM05D001532 ORTHO05D001402 4.1e-07 58.9 82 37.8
Cpa.g.sc132.60 Carica papaya HOM05D001532 ORTHO05D001402 5.4e-07 58.5 78 39.7
arahy.Tifrunner.gnm1.ann1.029YZL Arachis hypogaea HOM05D001532 ORTHO05D001402 7.0e-07 58.2 80 35.0
CiPaw.03G275700 Carya illinoinensis HOM05D001532 ORTHO05D001402 7.0e-07 58.2 47 55.3
Gohir.D07G174300 Gossypium hirsutum HOM05D001532 ORTHO05D001402 7.0e-07 58.2 79 41.8
arahy.Tifrunner.gnm1.ann1.A3V5PU Arachis hypogaea HOM05D001532 ORTHO05D001402 9.2e-07 57.8 80 35.0
Cfa014284 Carpinus fangiana HOM05D001532 ORTHO05D001402 9.2e-07 57.8 79 40.5
Manes.12G060702 Manihot esculenta HOM05D001532 ORTHO05D001402 9.2e-07 57.8 76 43.4
VMungo0647G1876 Vigna mungo HOM05D001532 ORTHO05D001402 9.2e-07 57.8 77 37.7
CANSAT64G1987 Cannabis sativa HOM05D001532 ORTHO05D001402 1.2e-06 57.4 84 40.5
Cfa014285 Carpinus fangiana HOM05D001532 ORTHO05D001402 1.2e-06 57.4 47 53.2
Gohir.D07G174200 Gossypium hirsutum HOM05D001532 ORTHO05D001402 1.2e-06 57.4 47 51.1
Gorai.001G194800 Gossypium raimondii HOM05D001532 ORTHO05D001402 1.2e-06 57.4 47 51.1
Sabra02G0170600 Salix brachista HOM05D001532 ORTHO05D001402 1.2e-06 57.4 83 37.3
HPP92_023457 Vanilla planifolia HOM05D001532 ORTHO05D001402 1.6e-06 57.0 97 38.1
HPP92_023475 Vanilla planifolia HOM05D001532 ORTHO05D001402 1.6e-06 57.0 97 38.1
CiPaw.03G104000 Carya illinoinensis HOM05D001532 ORTHO05D001402 2.0e-06 56.6 47 53.2
CiPaw.03G275200 Carya illinoinensis HOM05D001532 ORTHO05D001402 2.0e-06 56.6 47 53.2
Haze_12732 Corylus avellana HOM05D001532 ORTHO05D001402 2.0e-06 56.6 79 39.2
Gorai.001G194900 Gossypium raimondii HOM05D001532 ORTHO05D001402 2.0e-06 56.6 79 41.8
SMO137G0091 Selaginella moellendorffii HOM05D001532 ORTHO05D001402 2.0e-06 56.6 102 39.2
VMungo1383G3242 Vigna mungo HOM05D001532 ORTHO05D001402 2.0e-06 56.6 76 40.8
CDE04G3231 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 2.7e-06 56.2 105 32.4
COL.COLO4_31993 Corchorus olitorius HOM05D001532 ORTHO05D001402 2.7e-06 56.2 79 38.0
COL.COLO4_36678 Corchorus olitorius HOM05D001532 ORTHO05D001402 2.7e-06 56.2 79 38.0
Gohir.A07G171500 Gossypium hirsutum HOM05D001532 ORTHO05D001402 2.7e-06 56.2 47 48.9
Sabra02G0170700 Salix brachista HOM05D001532 ORTHO05D001402 2.7e-06 56.2 76 38.2
Sabra14G0122900 Salix brachista HOM05D001532 ORTHO05D001402 2.7e-06 56.2 76 39.5
Ah.15g095040 Amaranthus hybridus HOM05D001532 ORTHO05D001402 3.5e-06 55.8 80 42.5
CDE06G1785 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 3.5e-06 55.8 76 38.2
CsaV3_6G037530 Cucumis sativus L. HOM05D001532 ORTHO05D001402 3.5e-06 55.8 79 39.2
PGR142G3159 Punica granatum HOM05D001532 ORTHO05D001402 3.5e-06 55.8 81 43.2
Ciclev10018354m.g Citrus clementina HOM05D001532 ORTHO05D001402 4.5e-06 55.5 76 39.5
Dinv04257 Davidia involucrata HOM05D001488 ORTHO05D001456 4.5e-06 55.5 46 56.5
HanXRQChr04g0126801 Helianthus annuus HOM05D001532 ORTHO05D001402 4.5e-06 55.5 76 38.2
Lalb_Chr10g0091681 Lupinus albus HOM05D001532 ORTHO05D001402 4.5e-06 55.5 44 54.5
Potri.002G218500 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.5e-06 55.5 76 39.5
GSVIVG01030393001 Vitis vinifera HOM05D001532 ORTHO05D001402 4.5e-06 55.5 76 39.5
Eucgr.K00715 Eucalyptus grandis HOM05D001532 ORTHO05D001402 5.9e-06 55.1 103 34.0
MD09G1118000 Malus domestica HOM05D001532 ORTHO05D001402 5.9e-06 55.1 79 36.7
MD17G1109300 Malus domestica HOM05D001532 ORTHO05D001402 5.9e-06 55.1 47 51.1
MELO3C014359.2 Cucumis melo HOM05D001532 ORTHO05D001402 7.7e-06 54.7 79 39.2
Duzib138G1565 Durio zibethinus HOM05D001532 ORTHO05D001402 7.7e-06 54.7 79 36.7
MBI03_g29112_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 7.7e-06 54.7 91 38.5
Os03g0411300 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 7.7e-06 54.7 83 41.0


User provided reference genes

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