Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 2144.8 1049 100.0
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1493.4 984 74.9
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1279.2 1011 62.8
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 0.0e+00 1230.7 994 61.0
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 0.0e+00 1217.6 996 60.4
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 0.0e+00 1214.9 994 62.3
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 0.0e+00 1200.3 980 60.4
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1198.3 1000 60.3
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 0.0e+00 1192.9 984 60.5
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1192.6 986 60.2
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 0.0e+00 1186.4 986 59.9
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1184.9 986 60.3
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1180.2 985 61.4
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1157.1 985 60.5
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 0.0e+00 1155.6 997 59.1
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1153.3 1017 57.8
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 0.0e+00 1125.2 994 57.9
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 0.0e+00 1116.7 979 56.7
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 0.0e+00 1105.9 990 55.4
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 0.0e+00 1104.7 989 57.2
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 0.0e+00 1095.5 989 55.0
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 0.0e+00 1091.6 990 54.7
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 0.0e+00 1090.5 989 54.9
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 0.0e+00 1085.1 988 54.1
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 0.0e+00 1084.3 984 55.5
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 0.0e+00 1083.9 993 53.6
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 0.0e+00 1082.8 990 54.1
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 0.0e+00 1081.2 989 54.5
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 0.0e+00 1080.1 975 55.8
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 9.3e-310 1067.0 985 53.5
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 2.5e-307 1058.9 834 61.3
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 2.2e-303 1045.8 983 53.5
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 7.9e-301 1037.3 984 53.3
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 5.3e-297 1024.6 989 52.3
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 6.7e-292 1007.7 1024 51.6
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 2.1e-290 1002.7 1013 50.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.4e-289 1000.0 865 58.6
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 2.4e-289 999.2 985 51.6
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 2.4e-289 999.2 979 51.6
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 5.3e-289 998.0 986 51.7
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 3.4e-288 995.3 983 51.1
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 7.6e-288 994.2 984 51.8
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 3.0e-284 982.2 979 51.0
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 5.9e-280 968.0 995 50.5
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 7.6e-280 967.6 922 53.4
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 2.5e-278 962.6 750 62.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 3.6e-277 958.7 994 50.2
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 1.8e-273 946.4 985 48.0
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.1e-273 945.7 933 52.2
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.0e-271 940.6 1004 49.1
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.3e-271 940.3 984 48.2
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 2.9e-271 939.1 988 48.0
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 5.5e-270 934.9 985 47.3
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 2.7e-269 932.6 986 49.4
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 4.6e-269 931.8 987 47.3
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 2.6e-267 926.0 987 50.7
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 5.7e-267 924.9 979 48.2
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 1.1e-265 920.6 1003 50.0
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.4e-265 919.5 980 47.7
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.5e-264 916.8 980 47.8
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.3e-263 913.7 972 49.2
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 4.2e-262 908.7 987 47.3
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 1.8e-260 903.3 1112 45.9
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 5.7e-259 898.3 989 48.0
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 7.4e-259 897.9 990 49.3
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.2e-256 890.6 940 49.4
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.0e-251 873.2 984 47.6
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 5.3e-249 865.1 788 55.7
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 7.0e-249 864.8 1003 45.8
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 7.7e-248 861.3 933 49.3
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.3e-247 860.5 980 47.3
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.5e-222 777.3 980 43.0
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 3.3e-222 776.2 809 49.1
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 5.6e-222 775.4 752 52.1
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 1.7e-218 763.8 985 42.4
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.2e-216 757.7 850 45.2
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 4.7e-213 745.7 1003 44.0
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 1.4e-212 744.2 857 46.8
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 5.2e-212 742.3 750 47.7
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 8.3e-210 734.9 802 48.0
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 4.1e-209 732.6 983 42.4
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.6e-208 730.7 978 41.8
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 3.8e-194 682.9 720 47.5
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.1e-193 681.4 763 47.1
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 3.2e-193 679.9 717 46.9
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.3e-189 667.9 574 56.6
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 2.3e-175 620.5 1014 37.0
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 3.0e-175 620.2 575 54.8
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.8e-148 531.2 428 58.9
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 2.5e-137 494.2 856 36.7
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 3.8e-130 470.3 755 38.7
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 4.7e-112 410.2 408 50.0
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.9e-105 388.3 367 53.7
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.1e-97 362.5 461 47.3
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 2.8e-96 357.8 999 28.9
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 1.7e-85 322.0 1022 26.6
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 1.7e-85 322.0 948 27.4
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 4.2e-84 317.4 200 70.5
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 6.9e-79 300.1 147 97.3
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 5.4e-76 290.4 498 36.7
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.4e-70 271.2 193 66.3
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.7e-69 268.9 313 43.1
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 4.2e-68 264.2 256 53.1
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 1.0e-66 259.6 448 37.7
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 8.1e-64 250.0 235 50.6
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.8e-55 222.2 209 54.5
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 3.1e-55 221.5 404 34.2
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.6e-51 209.1 196 54.6
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.5e-49 202.6 210 51.9
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 7.4e-49 200.3 140 64.3
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.1e-47 196.4 185 53.5
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.3e-47 194.1 142 62.0
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.5e-44 184.1 195 53.3
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 9.4e-36 156.8 112 65.2
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 1.7e-32 146.0 254 35.8
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 8.5e-29 133.7 157 46.5
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 1.2e-27 129.8 148 48.0
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 2.7e-27 128.6 148 48.0
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 2.3e-26 125.6 76 69.7
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 3.4e-17 95.1 155 38.1
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 4.8e-16 91.3 103 44.7
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 8.3e-16 90.5 167 36.5
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 5.0e-13 81.3 126 40.5
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 4.7e-11 74.7 58 56.9
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 5.2e-10 71.2 47 66.0
Glyma.13G098900 Glycine max HOM05D005971 ORTHO05D007459 2.0e-09 69.3 64 48.4
Glyma.13G052500 Glycine max HOM05D005971 ORTHO05D007459 2.6e-09 68.9 64 48.4
Glyma.13G099100 Glycine max HOM05D005971 ORTHO05D007459 1.4e-07 63.2 60 51.7
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 9.1e-07 60.5 49 59.2


User provided reference genes

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