Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019394 Carpinus fangiana HOM05D007940 ORTHO05D010046 2.0e-40 168.7 86 100.0
QL11p017779 Quercus lobata HOM05D007940 ORTHO05D010046 3.1e-30 134.8 84 77.4
FAN16G1222 Fragaria x ananassa HOM05D007940 ORTHO05D010046 2.2e-28 128.6 81 75.3
TWI38G0312 Tripterygium wilfordii HOM05D007940 ORTHO05D010046 3.2e-27 124.8 82 69.5
Lalb_Chr07g0188831 Lupinus albus HOM05D007940 ORTHO05D010046 4.2e-27 124.4 80 75.0
Atru.chr10.309 Acer truncatum HOM05D007940 ORTHO05D010046 1.0e-25 119.8 80 71.2
MELO3C021755.2 Cucumis melo HOM05D007940 ORTHO05D010046 1.8e-25 119.0 80 67.5
ClCG01G009440 Citrullus lanatus HOM05D007940 ORTHO05D010046 5.2e-25 117.5 80 66.2
RcHm_v2.0_Chr5g0020061 Rosa chinensis HOM05D007940 ORTHO05D010046 5.2e-25 117.5 79 70.9
Sabra15G0137900 Salix brachista HOM05D007940 ORTHO05D010046 6.7e-25 117.1 81 66.7
Aa31LG2G15120 Aethionema arabicum HOM05D007940 ORTHO05D010046 1.2e-24 116.3 83 63.9
Migut.M01978 Erythranthe guttata HOM05D007940 ORTHO05D010046 1.2e-24 116.3 82 67.1
MD05G1252500 Malus domestica HOM05D007940 ORTHO05D010046 1.2e-24 116.3 81 67.9
Potri.015G121500 Populus trichocarpa HOM05D007940 ORTHO05D010046 1.2e-24 116.3 81 66.7
CSS0023427 Camellia sinensis var. sinensis HOM05D007940 ORTHO05D010046 1.5e-24 115.9 74 74.3
Eucgr.D01043 Eucalyptus grandis HOM05D007940 ORTHO05D010046 1.5e-24 115.9 81 69.1
FAN21G0368 Fragaria x ananassa HOM05D007940 ORTHO05D010046 1.5e-24 115.9 81 71.6
Glyma.15G146300 Glycine max HOM05D007940 ORTHO05D010046 1.5e-24 115.9 79 70.9
Prupe.4G111600 Prunus persica HOM05D007940 ORTHO05D010046 1.5e-24 115.9 84 66.7
MD10G1233500 Malus domestica HOM05D007940 ORTHO05D010046 2.0e-24 115.5 81 67.9
Oeu008726.1 Olea europaea HOM05D007940 ORTHO05D010046 2.0e-24 115.5 84 65.5
Nn7g38154 Nelumbo nucifera HOM05D007940 ORTHO05D010046 3.3e-24 114.8 82 68.3
Phvul.009G252500 Phaseolus vulgaris HOM05D007940 ORTHO05D010046 3.3e-24 114.8 80 66.2
SGA_v2.0_scaffold298G47684 Striga asiatica HOM05D007940 ORTHO05D010046 4.4e-24 114.4 82 65.9
Manes.16G056500 Manihot esculenta HOM05D007940 ORTHO05D010046 7.5e-24 113.6 82 67.1
Sc16g0011710 Simmondsia chinensis HOM05D007940 ORTHO05D010046 1.3e-23 112.8 82 64.6
DCAR_003782 Daucus carota HOM05D007940 ORTHO05D010046 2.2e-23 112.1 79 65.8
Sed0008509 Sechium edule HOM05D007940 ORTHO05D010046 2.2e-23 112.1 80 61.2
Duzib235G0199 Durio zibethinus HOM05D007940 ORTHO05D010046 2.8e-23 111.7 82 65.9
SalBow6G6284 Salvia bowleyana HOM05D007940 ORTHO05D010046 4.8e-23 110.9 82 62.2
SalBow8G3130 Salvia bowleyana HOM05D007940 ORTHO05D010046 4.8e-23 110.9 82 62.2
TPR.G22024 Trifolium pratense HOM05D007940 ORTHO05D010046 4.8e-23 110.9 77 67.5
Actinidia33707 Actinidia chinensis HOM05D007940 ORTHO05D010046 6.3e-23 110.5 79 67.1
CARHR030670 Cardamine hirsuta HOM05D007940 ORTHO05D010046 6.3e-23 110.5 84 60.7
Hma1.2p1_0040F.1_g025155 Hydrangea macrophylla HOM05D007940 ORTHO05D010046 6.3e-23 110.5 82 63.4
Sp1g27000 Schrenkiella parvula HOM05D007940 ORTHO05D010046 1.1e-22 109.8 84 58.3
Thecc.06G142100 Theobroma cacao HOM05D007940 ORTHO05D010046 1.4e-22 109.4 82 65.9
AL1G49310 Arabidopsis lyrata HOM05D007940 ORTHO05D010046 1.8e-22 109.0 84 58.3
Manes.16G057400 Manihot esculenta HOM05D007940 ORTHO05D010046 1.8e-22 109.0 79 67.1
Psat1g156840 Pisum sativum HOM05D007940 ORTHO05D010046 1.8e-22 109.0 77 67.5
Carub.0001s2958 Capsella rubella HOM05D007940 ORTHO05D010046 2.4e-22 108.6 84 58.3
Cc09_g06150 Coffea canephora HOM05D007940 ORTHO05D010046 2.4e-22 108.6 81 65.4
Ah.06g193510 Amaranthus hybridus HOM05D007940 ORTHO05D010046 3.1e-22 108.2 80 62.5
A09p35060 Brassica napus HOM05D007940 ORTHO05D010046 3.1e-22 108.2 91 57.1
AT1G31175 Arabidopsis thaliana HOM05D007940 ORTHO05D010046 4.1e-22 107.8 84 57.1
BraA09t39037Z Brassica rapa HOM05D007940 ORTHO05D010046 4.1e-22 107.8 82 58.5
Thhalv10009859m.g Eutrema salsugineum HOM05D007940 ORTHO05D010046 5.3e-22 107.5 83 57.8
BcaB07g32779 Brassica carinata HOM05D007940 ORTHO05D010046 2.0e-21 105.5 80 58.8
BcaC05g27148 Brassica carinata HOM05D007940 ORTHO05D010046 2.0e-21 105.5 89 56.2
BcaC09g51575 Brassica carinata HOM05D007940 ORTHO05D010046 2.0e-21 105.5 89 56.2
BolC1t01151H Brassica oleracea HOM05D007940 ORTHO05D010046 2.0e-21 105.5 89 56.2
CANSAT35G1488 Cannabis sativa HOM05D007940 ORTHO05D010046 2.0e-21 105.5 82 61.0
Aqoxy3G00719 Aquilegia oxysepala HOM05D007940 ORTHO05D010046 2.7e-21 105.1 79 64.6
Ca_01891_v3 Cicer arietinum L. HOM05D007940 ORTHO05D010046 2.7e-21 105.1 77 66.2
THA.LOC104798551 Tarenaya hassleriana HOM05D007940 ORTHO05D010046 4.5e-21 104.4 84 61.9
EL10Ac4g10315 Beta vulgaris HOM05D007940 ORTHO05D010046 5.9e-21 104.0 75 62.7
Medtr2g435250 Medicago truncatula HOM05D007940 ORTHO05D010046 7.7e-21 103.6 77 63.6
Lsat_1_v5_gn_5_23140 Lactuca sativa HOM05D007940 ORTHO05D010046 1.0e-20 103.2 76 59.2
HanXRQChr04g0109371 Helianthus annuus HOM05D007940 ORTHO05D010046 8.5e-20 100.1 82 56.1
HPP92_017565 Vanilla planifolia HOM05D007940 ORTHO05D010046 7.2e-19 97.1 80 61.2
Sopen11g010730 Solanum pennellii HOM05D007940 ORTHO05D010046 1.6e-18 95.9 81 56.8
Solyc11g020710.2 Solanum lycopersicum HOM05D007940 ORTHO05D010046 2.7e-18 95.1 81 56.8
Os07g0567500 Oryza sativa ssp. japonica HOM05D007940 ORTHO05D010046 3.0e-17 91.7 81 56.8
Ciclev10017318m.g Citrus clementina HOM05D007940 ORTHO05D010046 5.2e-17 90.9 78 57.7
Gohir.D05G147600 Gossypium hirsutum HOM05D007940 ORTHO05D010046 5.2e-17 90.9 81 58.0
Zm00001eb107160 Zea mays HOM05D007940 ORTHO05D010046 5.2e-17 90.9 81 53.1
Gohir.D05G147732 Gossypium hirsutum HOM05D007940 ORTHO05D010046 2.6e-16 88.6 81 58.0
COL.COLO4_30989 Corchorus olitorius HOM05D007940 ORTHO05D010046 7.5e-16 87.0 81 54.3
Gorai.009G151700 Gossypium raimondii HOM05D007940 ORTHO05D010046 7.5e-16 87.0 81 56.8
MBI02_g13338_MAGBIO Magnolia biondii HOM05D007940 ORTHO05D010046 2.2e-15 85.5 72 58.3
PSO675G1966 Papaver somniferum HOM05D007940 ORTHO05D010046 7.0e-14 80.5 55 63.6
CsaV3_1G046330 Cucumis sativus L. HOM05D007940 ORTHO05D010046 1.5e-11 72.8 49 59.2
TAR624G1282 Trochodendron aralioides HOM05D007940 ORTHO05D010046 4.2e-11 71.2 48 68.8
Mapoly0019s0110 Marchantia polymorpha HOM05D007940 ORTHO05D010046 4.7e-10 67.8 74 44.6
CBR_g28534 Chara braunii HOM05D007940 ORTHO05D010046 5.2e-09 64.3 82 42.7
SMO347G0336 Selaginella moellendorffii HOM05D007940 ORTHO05D010046 2.8e-07 58.5 79 38.0


User provided reference genes

Program Settings