Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.6e-55 219.2 110 100.0
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.1e-43 179.9 102 93.1
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 6.0e-42 174.1 103 91.3
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.9e-28 128.6 88 75.0
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 7.3e-24 114.0 94 68.1
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 4.4e-21 104.8 86 72.1
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.9e-20 101.3 112 55.4
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 4.9e-20 101.3 114 52.6
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 4.9e-20 101.3 114 53.5
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 6.4e-20 100.9 84 61.9
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 8.4e-20 100.5 121 50.4
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 8.4e-20 100.5 112 55.4
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 8.4e-20 100.5 112 55.4
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 8.4e-20 100.5 112 55.4
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.4e-19 99.8 83 63.9
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.1e-19 98.2 112 54.5
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.1e-19 98.2 112 54.5
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 9.2e-19 97.1 113 54.0
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 2.7e-18 95.5 79 69.6
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 2.7e-18 95.5 82 63.4
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.3e-17 92.4 83 59.0
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 5.1e-17 91.3 79 67.1
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 5.1e-17 91.3 99 51.5
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 5.1e-17 91.3 111 51.4
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 6.6e-17 90.9 120 50.8
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.3e-16 88.6 87 57.5
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 4.3e-16 88.2 103 53.4
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 4.3e-16 88.2 125 44.0
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 7.3e-16 87.4 86 55.8
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 9.6e-16 87.0 91 54.9
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.2e-15 86.7 103 53.4
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 1.6e-15 86.3 105 51.4
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 1.6e-15 86.3 89 59.6
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 1.6e-15 86.3 115 46.1
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 1.6e-15 86.3 87 56.3
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.6e-15 86.3 98 51.0
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.1e-15 85.9 82 54.9
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 2.8e-15 85.5 83 56.6
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 4.7e-15 84.7 87 55.2
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 8.1e-15 84.0 96 55.2
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 1.4e-14 83.2 103 49.5
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 3.1e-14 82.0 121 47.9
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 5.2e-14 81.3 84 57.1
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 6.9e-14 80.9 84 56.0
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.0e-14 80.5 74 63.5
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.0e-14 80.5 82 58.5
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 3.4e-13 78.6 83 55.4
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 4.4e-13 78.2 81 51.9
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 4.4e-13 78.2 83 55.4
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 5.8e-13 77.8 84 53.6
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 5.8e-13 77.8 78 52.6
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 7.6e-13 77.4 86 54.7
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 9.9e-13 77.0 125 40.8
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 9.9e-13 77.0 77 58.4
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 9.9e-13 77.0 124 41.1
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.3e-12 76.6 82 56.1
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.9e-12 75.5 114 45.6
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 2.9e-12 75.5 107 46.7
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 4.9e-12 74.7 124 41.1
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 4.9e-12 74.7 74 54.1
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.9e-12 74.7 82 54.9
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.9e-12 74.7 82 54.9
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 6.4e-12 74.3 82 54.9
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.1e-11 73.6 86 52.3
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 1.1e-11 73.6 91 49.5
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.4e-11 73.2 80 51.2
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 1.9e-11 72.8 95 49.5
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 4.2e-11 71.6 75 53.3
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 5.4e-11 71.2 117 47.9
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 1.2e-10 70.1 91 49.5
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.1e-10 69.3 79 53.2
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 2.1e-10 69.3 74 48.6
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.1e-10 69.3 79 53.2
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 2.7e-10 68.9 80 55.0
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 3.5e-10 68.6 84 50.0
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 3.5e-10 68.6 124 40.3
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 3.5e-10 68.6 102 46.1
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 3.5e-10 68.6 79 53.2
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 4.6e-10 68.2 79 51.9
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 4.6e-10 68.2 79 53.2
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.3e-09 66.6 79 51.9
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.3e-09 66.6 79 51.9
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.7e-09 66.2 79 50.6
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.7e-09 66.2 86 50.0
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 1.7e-09 66.2 82 50.0
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 2.3e-09 65.9 116 42.2
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 2.3e-09 65.9 79 51.9
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 2.3e-09 65.9 79 51.9
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 2.3e-09 65.9 79 51.9
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 2.3e-09 65.9 79 51.9
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 2.3e-09 65.9 79 51.9
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 2.3e-09 65.9 79 51.9
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.3e-09 65.9 106 43.4
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.0e-09 65.5 79 49.4
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 3.0e-09 65.5 106 43.4
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 3.9e-09 65.1 111 38.7
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 5.1e-09 64.7 79 49.4
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 6.6e-09 64.3 79 49.4
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 6.6e-09 64.3 79 49.4
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 6.6e-09 64.3 79 49.4
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 6.6e-09 64.3 79 49.4
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 6.6e-09 64.3 79 49.4
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 6.6e-09 64.3 79 50.6
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 6.6e-09 64.3 115 40.9
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 6.6e-09 64.3 106 41.5
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 8.7e-09 63.9 113 41.6
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 8.7e-09 63.9 81 49.4
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 1.5e-08 63.2 105 42.9
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 1.9e-08 62.8 68 52.9
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 2.5e-08 62.4 79 50.6
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 2.5e-08 62.4 109 41.3
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 2.5e-08 62.4 98 42.9
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 5.6e-08 61.2 79 49.4
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 5.6e-08 61.2 101 47.5
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 9.6e-08 60.5 70 47.1
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 9.6e-08 60.5 98 42.9
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.3e-07 60.1 113 39.8
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 2.1e-07 59.3 79 48.1
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.1e-07 59.3 70 52.9
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 2.1e-07 59.3 112 40.2
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.1e-07 59.3 98 41.8
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 3.6e-07 58.5 116 37.9
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 8.1e-07 57.4 79 45.6
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 1.1e-06 57.0 119 36.1
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 3.1e-06 55.5 105 39.0
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 4.0e-06 55.1 78 48.7
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 5.3e-06 54.7 120 37.5
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 6.9e-06 54.3 79 43.0
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 9.0e-06 53.9 116 36.2


User provided reference genes

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