Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 2.9e-188 661.8 338 100.0
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 3.8e-172 608.2 367 87.7
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.2e-146 523.5 341 80.1
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.7e-138 495.7 350 77.1
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 5.9e-125 451.4 347 69.7
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 9.5e-115 417.5 351 65.5
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 2.1e-114 416.4 346 65.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 4.0e-113 412.1 343 65.3
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 6.8e-113 411.4 334 66.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 5.4e-110 401.7 345 66.1
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.7e-109 399.4 347 65.1
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 6.6e-108 394.8 348 64.4
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.9e-107 393.3 344 62.8
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.1e-105 387.5 343 62.1
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.4e-105 387.1 347 62.0
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 4.9e-103 378.6 348 60.9
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.1e-102 377.5 349 60.7
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 2.4e-102 376.3 343 61.2
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 4.1e-102 375.6 349 60.7
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 5.4e-102 375.2 339 62.8
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.0e-101 371.7 340 62.6
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.7e-100 370.2 340 60.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 3.9e-100 369.0 345 59.4
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.6e-98 363.6 344 61.9
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 8.1e-98 361.3 343 59.8
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 8.1e-98 361.3 345 60.0
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 7.6e-96 354.8 353 58.9
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.2e-95 353.2 347 59.4
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 8.4e-95 351.3 345 57.4
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.4e-94 350.5 340 58.5
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.7e-93 346.3 343 57.7
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 6.0e-93 345.1 345 60.6
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 3.9e-92 342.4 345 56.2
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 6.6e-92 341.7 382 53.4
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 3.3e-91 339.3 353 56.4
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.6e-91 338.6 340 58.5
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 7.3e-91 338.2 353 56.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 7.3e-91 338.2 353 56.9
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.1e-90 336.7 349 56.2
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 4.7e-90 335.5 350 54.9
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 6.2e-90 335.1 333 57.7
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 8.1e-90 334.7 341 56.6
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.8e-89 333.6 255 69.8
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.8e-89 333.6 340 56.2
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 3.1e-89 332.8 335 57.3
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 3.1e-89 332.8 350 56.6
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 8.9e-89 331.3 344 54.7
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.5e-88 330.5 255 69.0
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.5e-88 330.5 255 69.0
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.5e-88 330.5 329 57.8
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.0e-88 330.1 353 55.0
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 2.2e-87 326.6 385 53.2
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.2e-87 326.6 341 56.0
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 2.9e-87 326.2 340 54.4
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.9e-87 326.2 314 58.3
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 4.9e-87 325.5 346 53.8
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.4e-86 323.2 335 54.9
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.7e-85 319.7 304 58.2
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.0e-84 317.8 211 73.9
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.3e-84 317.4 349 52.4
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.3e-84 317.4 358 51.7
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.0e-84 316.2 344 53.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.9e-84 315.8 234 70.1
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.6e-84 315.1 338 54.7
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.1e-83 314.3 235 69.8
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.3e-83 312.8 335 54.0
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-82 310.5 340 53.8
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 6.2e-82 308.5 313 56.2
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 8.1e-82 308.1 325 56.6
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 8.1e-82 308.1 325 56.6
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 6.9e-81 305.1 307 57.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.2e-80 304.3 332 53.6
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.2e-80 304.3 357 51.0
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-80 303.5 339 51.6
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.6e-80 303.1 351 51.9
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.6e-80 303.1 340 52.4
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 4.5e-80 302.4 315 55.6
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 6.4e-79 298.5 344 51.5
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.0e-76 291.2 336 52.4
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.5e-75 287.3 351 51.0
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.5e-75 286.6 338 50.0
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.4e-73 280.8 333 50.8
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 4.5e-72 275.8 354 50.8
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 9.9e-72 274.6 267 56.9
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 3.8e-71 272.7 209 65.6
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 7.9e-69 265.0 213 64.3
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.3e-68 264.2 329 48.6
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 6.7e-68 261.9 260 55.4
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 7.4e-67 258.5 273 56.4
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.7e-66 256.1 282 50.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 3.1e-65 253.1 210 64.8
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.9e-63 246.5 218 61.0
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 3.8e-63 246.1 218 61.0
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.9e-60 236.1 340 43.2
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 5.7e-59 232.3 199 60.3
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 5.3e-57 225.7 310 43.5
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 6.9e-57 225.3 215 60.9
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 7.6e-56 221.9 205 57.6
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.4e-54 217.6 215 52.1
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.8e-52 210.7 207 55.6
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 6.7e-52 208.8 233 54.1
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 3.3e-51 206.5 198 56.1
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.1e-49 201.4 307 41.4
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.4e-49 201.1 257 44.7
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.4e-49 201.1 133 78.9
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 9.1e-49 198.4 264 45.8
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.4e-46 191.0 246 47.6
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 4.2e-46 189.5 262 48.1
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.2e-46 188.7 263 46.0
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 9.4e-46 188.3 214 47.7
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-44 184.5 124 78.2
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.7e-44 182.2 327 41.3
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.5e-43 181.0 159 59.7
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 6.3e-42 175.6 133 66.9
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 8.2e-42 175.3 286 40.9
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.8e-41 174.1 246 45.1
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.1e-41 173.3 292 39.7
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 4.1e-41 172.9 318 38.7
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.9e-41 172.2 335 40.0
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.2e-40 171.4 306 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.5e-40 171.0 203 46.8
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 2.0e-40 170.6 193 49.7
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.3e-39 167.9 171 57.9
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 2.3e-36 157.1 250 37.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 6.7e-36 155.6 217 47.9
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.0e-35 154.1 229 45.4
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.0e-35 154.1 283 37.8
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.3e-35 153.3 101 76.2
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.3e-34 151.4 143 57.3
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.4e-33 147.9 283 37.1
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.8e-33 147.5 250 40.4
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.1e-33 146.7 294 37.8
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.0e-32 144.1 301 36.5
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-31 141.4 121 62.8
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 8.5e-31 138.7 298 34.9
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.8e-28 128.6 93 72.0
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.4e-27 126.3 117 57.3
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.7e-26 123.2 76 82.9
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.2e-26 122.1 86 69.8
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.1e-25 121.7 121 52.1
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 4.7e-21 106.3 73 67.1
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.2e-19 101.7 175 40.0
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 3.1e-17 93.6 87 62.1
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-16 89.7 188 28.7
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 7.7e-16 89.0 73 65.8
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 3.4e-11 73.6 101 42.6
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.4e-09 68.2 43 74.4
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 2.9e-07 60.5 174 28.7


User provided reference genes

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