Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019312 Carpinus fangiana HOM05D006748 ORTHO05D008553 1.9e-53 212.2 107 100.0
Haze_07696 Corylus avellana HOM05D006748 ORTHO05D008553 2.8e-52 208.4 107 97.2
CiPaw.12G007800 Carya illinoinensis HOM05D006748 ORTHO05D008553 6.8e-51 203.8 107 94.4
Thecc.03G099400 Theobroma cacao HOM05D006748 ORTHO05D008553 5.4e-48 194.1 108 92.6
Gohir.A12G181700 Gossypium hirsutum HOM05D006748 ORTHO05D008553 4.6e-47 191.0 108 89.8
Gohir.D12G184500 Gossypium hirsutum HOM05D006748 ORTHO05D008553 4.6e-47 191.0 108 89.8
Gorai.008G197900 Gossypium raimondii HOM05D006748 ORTHO05D008553 4.6e-47 191.0 108 89.8
Duzib084G0059 Durio zibethinus HOM05D006748 ORTHO05D008553 1.3e-46 189.5 108 89.8
Dinv10524 Davidia involucrata HOM05D006748 ORTHO05D008553 1.7e-46 189.1 108 87.0
QL10p019141 Quercus lobata HOM05D006748 ORTHO05D008553 3.9e-46 188.0 103 87.4
ClCG06G015720 Citrullus lanatus HOM05D006748 ORTHO05D008553 4.3e-45 184.5 106 86.8
Actinidia35032 Actinidia chinensis HOM05D006748 ORTHO05D008553 5.6e-45 184.1 109 82.6
Potri.015G056300 Populus trichocarpa HOM05D006748 ORTHO05D008553 5.6e-45 184.1 108 84.3
Hma1.2p1_0060F.1_g033230 Hydrangea macrophylla HOM05D006748 ORTHO05D008553 9.5e-45 183.3 109 81.7
Sed0010236 Sechium edule HOM05D006748 ORTHO05D008553 1.2e-44 183.0 97 91.8
Nn3g17423 Nelumbo nucifera HOM05D006748 ORTHO05D008553 1.6e-44 182.6 107 79.4
TAR622G0828 Trochodendron aralioides HOM05D006748 ORTHO05D008553 4.7e-44 181.0 108 81.5
TWI81G0385 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 6.2e-44 180.6 107 83.2
CANSAT80G2841 Cannabis sativa HOM05D006748 ORTHO05D008553 8.1e-44 180.3 107 80.4
Cpa.g.sc94.24 Carica papaya HOM05D006748 ORTHO05D008553 1.1e-43 179.9 105 86.7
CsaV3_1G002810 Cucumis sativus L. HOM05D006748 ORTHO05D008553 2.4e-43 178.7 101 86.1
AT5G07960 Arabidopsis thaliana HOM05D006748 ORTHO05D008553 3.1e-43 178.3 105 81.0
Ca_18978_v3 Cicer arietinum L. HOM05D006748 ORTHO05D008553 3.1e-43 178.3 103 80.6
Eucgr.K02517 Eucalyptus grandis HOM05D006748 ORTHO05D008553 3.1e-43 178.3 100 85.0
Lj5A105G56 Lonicera japonica HOM05D006748 ORTHO05D008553 4.0e-43 177.9 107 77.6
Lj1g0012744 Lotus japonicus HOM05D006748 ORTHO05D008553 5.2e-43 177.6 107 78.5
Psat5g203080 Pisum sativum HOM05D006748 ORTHO05D008553 5.2e-43 177.6 103 79.6
Glyma.06G201800 Glycine max HOM05D006748 ORTHO05D008553 6.8e-43 177.2 101 79.2
Phvul.009G193300 Phaseolus vulgaris HOM05D006748 ORTHO05D008553 1.2e-42 176.4 107 76.6
Potri.012G065500 Populus trichocarpa HOM05D006748 ORTHO05D008553 1.2e-42 176.4 108 79.6
Sed0016176 Sechium edule HOM05D006748 ORTHO05D008553 1.2e-42 176.4 101 86.1
THA.LOC104818341 Tarenaya hassleriana HOM05D006748 ORTHO05D008553 1.2e-42 176.4 105 81.0
Manes.06G086100 Manihot esculenta HOM05D006748 ORTHO05D008553 2.0e-42 175.6 107 81.3
Ciclev10023002m.g Citrus clementina HOM05D006748 ORTHO05D008553 2.6e-42 175.3 107 81.3
PSO541G5074 Papaver somniferum HOM05D006748 ORTHO05D008553 2.6e-42 175.3 108 79.6
PSO675G4773 Papaver somniferum HOM05D006748 ORTHO05D008553 2.6e-42 175.3 108 79.6
TPR.G12215 Trifolium pratense HOM05D006748 ORTHO05D008553 2.6e-42 175.3 105 77.1
TWI60G0647 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 2.6e-42 175.3 107 78.5
Atru.chr9.414 Acer truncatum HOM05D006748 ORTHO05D008553 4.4e-42 174.5 107 82.2
BcaB05g21592 Brassica carinata HOM05D006748 ORTHO05D008553 4.4e-42 174.5 105 79.0
Carub.0006s0686 Capsella rubella HOM05D006748 ORTHO05D008553 9.9e-42 173.3 105 79.0
CARHR205230 Cardamine hirsuta HOM05D006748 ORTHO05D008553 9.9e-42 173.3 105 79.0
AL6G18300 Arabidopsis lyrata HOM05D006748 ORTHO05D008553 1.3e-41 172.9 105 79.0
MD14G1210100 Malus domestica HOM05D006748 ORTHO05D008553 1.7e-41 172.6 99 83.8
Medtr3g024170 Medicago truncatula HOM05D006748 ORTHO05D008553 2.2e-41 172.2 107 74.8
Medtr3g024190 Medicago truncatula HOM05D006748 ORTHO05D008553 2.2e-41 172.2 107 74.8
CSS0043022 Camellia sinensis var. sinensis HOM05D006748 ORTHO05D008553 3.8e-41 171.4 104 79.8
Lalb_Chr16g0391551 Lupinus albus HOM05D006748 ORTHO05D008553 3.8e-41 171.4 107 76.6
Thhalv10015079m.g Eutrema salsugineum HOM05D006748 ORTHO05D008553 4.9e-41 171.0 105 77.1
Lalb_Chr09g0334301 Lupinus albus HOM05D006748 ORTHO05D008553 6.4e-41 170.6 107 78.5
GSVIVG01007891001 Vitis vinifera HOM05D006748 ORTHO05D008553 6.4e-41 170.6 110 78.2
QL09p026979 Quercus lobata HOM05D006748 ORTHO05D008553 1.1e-40 169.9 135 65.9
BcaC06g32512 Brassica carinata HOM05D006748 ORTHO05D008553 1.4e-40 169.5 105 76.2
BcaC03g13204 Brassica carinata HOM05D006748 ORTHO05D008553 2.4e-40 168.7 100 79.0
C02p03380 Brassica napus HOM05D006748 ORTHO05D008553 2.4e-40 168.7 100 79.0
BolC2t06300H Brassica oleracea HOM05D006748 ORTHO05D008553 2.4e-40 168.7 100 79.0
MD06G1200600 Malus domestica HOM05D006748 ORTHO05D008553 2.4e-40 168.7 99 83.8
C09p68960 Brassica napus HOM05D006748 ORTHO05D008553 3.2e-40 168.3 105 76.2
PGR044G1724 Punica granatum HOM05D006748 ORTHO05D008553 4.1e-40 167.9 105 80.0
BraA02t04939Z Brassica rapa HOM05D006748 ORTHO05D008553 7.1e-40 167.2 100 78.0
FvH4_5g14060 Fragaria vesca HOM05D006748 ORTHO05D008553 7.1e-40 167.2 98 82.7
FvH4_5g14160 Fragaria vesca HOM05D006748 ORTHO05D008553 1.2e-39 166.4 98 82.7
Sp6g34980 Schrenkiella parvula HOM05D006748 ORTHO05D008553 1.2e-39 166.4 102 78.4
Aa31LG3G18570 Aethionema arabicum HOM05D006748 ORTHO05D008553 2.7e-39 165.2 105 76.2
BolC9t59641H Brassica oleracea HOM05D006748 ORTHO05D008553 2.7e-39 165.2 105 75.2
Hund09880 Selenicereus undatus HOM05D006748 ORTHO05D008553 2.7e-39 165.2 103 78.6
RcHm_v2.0_Chr7g0182761 Rosa chinensis HOM05D006748 ORTHO05D008553 4.6e-39 164.5 98 78.6
FAN13G1579 Fragaria x ananassa HOM05D006748 ORTHO05D008553 6.0e-39 164.1 98 81.6
Zm00001eb057720 Zea mays HOM05D006748 ORTHO05D008553 8.6e-38 160.2 103 71.8
Actinidia19003 Actinidia chinensis HOM05D006748 ORTHO05D008553 1.9e-37 159.1 153 57.5
Os03g0756800 Oryza sativa ssp. japonica HOM05D006748 ORTHO05D008553 5.6e-37 157.5 98 72.4
Oeu008258.1 Olea europaea HOM05D006748 ORTHO05D008553 2.8e-36 155.2 92 82.6
Hund02598 Selenicereus undatus HOM05D006748 ORTHO05D008553 3.6e-36 154.8 101 70.3
Lsat_1_v5_gn_1_13560 Lactuca sativa HOM05D006748 ORTHO05D008553 1.1e-35 153.3 99 69.7
SHI30118 Sapria himalayana HOM05D006748 ORTHO05D008553 4.0e-35 151.4 92 77.2
Cc10_g05660 Coffea canephora HOM05D006748 ORTHO05D008553 9.0e-35 150.2 98 76.5
HanXRQChr02g0044721 Helianthus annuus HOM05D006748 ORTHO05D008553 3.4e-34 148.3 101 68.3
MSTRG.22979 Avicennia marina HOM05D006748 ORTHO05D008553 4.4e-34 147.9 92 78.3
HPP92_019473 Vanilla planifolia HOM05D006748 ORTHO05D008553 4.4e-34 147.9 91 74.7
Migut.I00325 Erythranthe guttata HOM05D006748 ORTHO05D008553 9.9e-34 146.7 92 77.2
EL10Ac5g11112 Beta vulgaris HOM05D006748 ORTHO05D008553 1.7e-33 146.0 94 78.7
unitig_750.g28509 Utricularia gibba HOM05D006748 ORTHO05D008553 2.2e-33 145.6 102 70.6
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 3.8e-33 144.8 110 67.3
Nitab4.5_0005160g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 6.4e-33 144.1 92 76.1
Nitab4.5_0011867g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 6.4e-33 144.1 92 76.1
Peaxi162Scf00702g00422 Petunia axillaris HOM05D006748 ORTHO05D008553 6.4e-33 144.1 92 75.0
Solyc06g069520.3 Solanum lycopersicum HOM05D006748 ORTHO05D008553 8.4e-33 143.7 99 69.7
Sopen06g026810 Solanum pennellii HOM05D006748 ORTHO05D008553 8.4e-33 143.7 99 69.7
vmacro16507 Vaccinium macrocarpon HOM05D006748 ORTHO05D008553 2.4e-32 142.1 88 78.4
ECA247G1600 Erigeron canadensis HOM05D006748 ORTHO05D008553 4.2e-32 141.4 101 64.4
Manes.14G084550 Manihot esculenta HOM05D006748 ORTHO05D008553 5.4e-32 141.0 87 79.3
Sc12g0006600 Simmondsia chinensis HOM05D006748 ORTHO05D008553 7.1e-32 140.6 87 81.6
SGA_v2.0_scaffold49G18162 Striga asiatica HOM05D006748 ORTHO05D008553 7.1e-32 140.6 92 71.7
VMungo1309G2295 Vigna mungo HOM05D006748 ORTHO05D008553 1.2e-31 139.8 86 76.7
Rhsim12G0151700 Rhododendron simsii HOM05D006748 ORTHO05D008553 4.6e-31 137.9 88 77.3
arahy.Tifrunner.gnm1.ann1.HPW464 Arachis hypogaea HOM05D006748 ORTHO05D008553 3.0e-30 135.2 85 75.3
CDE05G0122 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 7.3e-29 130.6 101 63.4
Mapoly0019s0070 Marchantia polymorpha HOM05D006748 ORTHO05D008553 2.1e-28 129.0 89 65.2
SMO201G0125 Selaginella moellendorffii HOM05D006748 ORTHO05D008553 2.1e-28 129.0 101 60.4
SGA_v2.0_scaffold25G10944 Striga asiatica HOM05D006748 ORTHO05D008553 4.0e-27 124.8 94 67.0
Sabra15G0081500 Salix brachista HOM05D006748 ORTHO05D008553 1.5e-26 122.9 87 71.3
HPP92_006054 Vanilla planifolia HOM05D006748 ORTHO05D008553 2.9e-25 118.6 90 60.0
Pp3c14_26790 Physcomitrium patens HOM05D006748 ORTHO05D008553 1.1e-24 116.7 92 60.9
AUR62008510 Chenopodium quinoa HOM05D006748 ORTHO05D008553 2.1e-23 112.5 81 71.6
ATR0064G062 Amborella trichopoda HOM05D006748 ORTHO05D008553 3.5e-23 111.7 83 67.5
CBR_g90015 Chara braunii HOM05D006748 ORTHO05D008553 3.5e-23 111.7 92 58.7
AUR62021580 Chenopodium quinoa HOM05D006748 ORTHO05D008553 3.5e-23 111.7 77 72.7
MELO3C017217.2 Cucumis melo HOM05D006748 ORTHO05D008553 1.5e-21 106.3 56 91.1
BraA10t44914Z Brassica rapa HOM05D006748 ORTHO05D008553 3.7e-20 101.7 58 81.0
AagrBONN_evm.TU.Sc2ySwM_117.1931 Anthoceros agrestis HOM05D006748 ORTHO05D008553 5.3e-19 97.8 98 55.1
HanXRQChr16g0510351 Helianthus annuus HOM05D006748 ORTHO05D008553 5.3e-19 97.8 70 64.3
A10p28650 Brassica napus HOM05D006748 ORTHO05D008553 2.0e-18 95.9 55 80.0
HanXRQChr14g0449601 Helianthus annuus HOM05D006748 ORTHO05D008553 2.3e-14 82.4 58 67.2
COL.COLO4_37587 Corchorus olitorius HOM05D006748 ORTHO05D008553 1.5e-13 79.7 53 75.5
CDE02G4382 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 3.8e-09 65.1 52 57.7
SEGI_29622 Sequoiadendron giganteum HOM05D006748 ORTHO05D008553 8.4e-09 63.9 50 64.0
Lj3C809T12 Lonicera japonica HOM05D000039 ORTHO05D029999 6.0e-07 57.8 53 52.8


User provided reference genes

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