Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019305 Carpinus fangiana HOM05D003840 ORTHO05D004565 7.1e-32 140.6 72 100.0
Haze_09463 Corylus avellana HOM05D003840 ORTHO05D004565 1.9e-21 105.9 64 89.1
Cfa020553 Carpinus fangiana HOM05D003840 ORTHO05D004565 1.6e-20 102.8 63 87.3
CiPaw.08G146100 Carya illinoinensis HOM05D003840 ORTHO05D004565 9.0e-19 97.1 69 75.4
CiPaw.12G120400 Carya illinoinensis HOM05D003840 ORTHO05D004565 4.5e-18 94.7 69 73.9
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 2.1e-12 75.9 69 58.0
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 2.8e-12 75.5 69 58.0
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 1.4e-11 73.2 69 56.5
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 3.1e-11 72.0 55 69.1
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 9.0e-11 70.5 69 53.6
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 1.2e-10 70.1 64 57.8
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 1.5e-10 69.7 57 61.4
Sabra16G0264000 Salix brachista HOM05D003840 ORTHO05D004565 3.4e-10 68.6 68 58.8
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea HOM05D003840 ORTHO05D004565 4.5e-10 68.2 63 55.6
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 4.5e-10 68.2 60 65.0
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 4.5e-10 68.2 65 60.0
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 4.5e-10 68.2 77 50.6
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea HOM05D003840 ORTHO05D004565 5.8e-10 67.8 69 52.2
TPR.G31093 Trifolium pratense HOM05D003840 ORTHO05D004565 7.6e-10 67.4 59 59.3
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 7.6e-10 67.4 56 58.9
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 1.0e-09 67.0 54 61.1
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 1.0e-09 67.0 57 61.4
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 1.3e-09 66.6 56 62.5
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 1.3e-09 66.6 62 56.5
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 1.7e-09 66.2 66 63.6
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 1.7e-09 66.2 64 59.4
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 1.7e-09 66.2 55 65.5
Manes.04G058628 Manihot esculenta HOM05D003840 ORTHO05D004565 2.2e-09 65.9 64 57.8
Phvul.005G082600 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 2.2e-09 65.9 66 53.0
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 2.2e-09 65.9 66 53.0
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 2.2e-09 65.9 66 53.0
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 2.2e-09 65.9 62 54.8
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 2.9e-09 65.5 56 64.3
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 2.9e-09 65.5 64 59.4
PGR031G0721 Punica granatum HOM05D003840 ORTHO05D004565 2.9e-09 65.5 55 63.6
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 4.9e-09 64.7 59 57.6
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 4.9e-09 64.7 61 59.0
Lalb_Chr25g0286521 Lupinus albus HOM05D003840 ORTHO05D004565 6.5e-09 64.3 59 59.3
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 8.4e-09 63.9 64 53.1
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 8.4e-09 63.9 59 57.6
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 1.4e-08 63.2 62 58.1
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 1.4e-08 63.2 66 54.5
MBI17_g43196_MAGBIO Magnolia biondii HOM05D003840 ORTHO05D004565 1.9e-08 62.8 60 56.7
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 1.9e-08 62.8 64 56.2
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 1.9e-08 62.8 54 63.0
CANSAT56G3533 Cannabis sativa HOM05D003840 ORTHO05D004565 2.5e-08 62.4 59 55.9
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 2.5e-08 62.4 55 61.8
Lj4g0007507 Lotus japonicus HOM05D003840 ORTHO05D004565 3.2e-08 62.0 49 63.3
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 4.2e-08 61.6 54 59.3
DCAR_013090 Daucus carota HOM05D003840 ORTHO05D004565 5.5e-08 61.2 54 61.1
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 5.5e-08 61.2 64 51.6
Atru.chr2.2716 Acer truncatum HOM05D003840 ORTHO05D004565 7.1e-08 60.8 68 54.4
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 7.1e-08 60.8 64 54.7
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 1.2e-07 60.1 59 54.2
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 1.6e-07 59.7 64 53.1
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 2.1e-07 59.3 70 45.7
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 2.1e-07 59.3 64 48.4
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 2.1e-07 59.3 64 48.4
THA.LOC104818066 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 2.7e-07 58.9 69 43.5
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 3.5e-07 58.5 64 50.0
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 3.5e-07 58.5 64 50.0
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 4.6e-07 58.2 72 51.4
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.0e-06 57.0 53 56.6
COL.COLO4_09425 Corchorus olitorius HOM05D003840 ORTHO05D004565 2.3e-06 55.8 64 50.0
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 3.0e-06 55.5 61 52.5
Ah.02g127530 Amaranthus hybridus HOM05D003840 ORTHO05D004565 3.9e-06 55.1 66 50.0
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 3.9e-06 55.1 52 55.8
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 3.9e-06 55.1 64 48.4
Aqoxy4G01004 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 5.1e-06 54.7 47 59.6
Aqoxy3G02137 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 6.7e-06 54.3 47 59.6
BcaB02g10967 Brassica carinata HOM05D003840 ORTHO05D004565 6.7e-06 54.3 56 50.0
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 6.7e-06 54.3 53 54.7


User provided reference genes

Program Settings