Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 1.5e-183 646.4 401 100.0
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 3.2e-133 479.2 302 94.0
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 1.1e-130 470.7 401 72.6
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 2.4e-125 453.0 400 70.5
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 7.3e-114 414.8 401 65.6
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 1.4e-112 410.6 403 66.0
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 4.4e-111 405.6 397 58.4
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 1.2e-108 397.5 400 61.0
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 1.3e-107 394.0 401 60.8
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 2.3e-107 393.3 404 57.2
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 3.4e-103 379.4 401 64.3
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 7.6e-103 378.3 395 64.1
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 4.9e-102 375.6 387 57.4
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 4.6e-100 369.0 376 65.2
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 6.0e-100 368.6 395 58.2
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 1.5e-98 364.0 431 60.1
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.5e-95 354.0 377 61.8
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 1.5e-95 354.0 382 55.0
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 3.4e-95 352.8 382 55.0
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 4.9e-94 349.0 393 60.3
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 3.2e-93 346.3 405 56.5
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 1.3e-91 340.9 394 62.7
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 8.7e-91 338.2 401 58.6
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 2.5e-90 336.7 390 59.2
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 7.4e-90 335.1 391 54.0
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 2.8e-89 333.2 388 51.8
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 8.1e-89 331.6 410 55.9
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 9.0e-88 328.2 398 56.0
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 9.0e-88 328.2 395 50.1
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.2e-87 327.8 400 58.8
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 9.9e-87 324.7 394 51.0
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 9.9e-87 324.7 401 57.1
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 2.2e-86 323.6 413 49.2
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 2.9e-86 323.2 394 56.1
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 2.9e-86 323.2 375 53.6
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 2.4e-85 320.1 347 63.1
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 6.7e-83 312.0 357 62.5
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 1.1e-82 311.2 388 52.6
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 2.1e-81 307.0 404 48.8
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 6.2e-81 305.4 390 51.5
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 8.1e-81 305.1 388 51.3
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 3.1e-80 303.1 294 65.6
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 1.5e-79 300.8 397 48.6
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 2.6e-79 300.1 401 52.9
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 1.3e-78 297.7 385 49.1
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 8.4e-78 295.0 414 50.0
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.1e-77 294.7 419 45.1
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 1.1e-77 294.7 394 59.4
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 1.6e-76 290.8 404 45.0
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 1.0e-75 288.1 399 47.1
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 1.8e-75 287.3 391 47.1
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 2.3e-75 287.0 437 43.0
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 9.6e-74 281.6 355 49.9
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 1.3e-73 281.2 389 45.5
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.6e-73 280.8 386 51.3
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 2.1e-73 280.4 401 48.4
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 4.8e-73 279.3 332 53.6
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 6.3e-73 278.9 391 51.2
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 8.2e-73 278.5 356 49.4
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.1e-72 278.1 391 47.8
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 1.1e-72 278.1 401 47.9
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 1.4e-72 277.7 386 45.1
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 1.3e-70 271.2 404 43.3
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 8.5e-70 268.5 431 43.9
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 5.5e-69 265.8 386 45.1
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 7.2e-69 265.4 392 42.9
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 9.3e-69 265.0 391 44.5
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 3.6e-68 263.1 388 47.2
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 3.0e-67 260.0 386 49.5
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 5.1e-67 259.2 275 56.7
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 2.5e-66 256.9 372 49.2
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 2.5e-66 256.9 340 47.6
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 4.3e-66 256.1 385 49.6
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 1.3e-65 254.6 385 47.3
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 3.7e-65 253.1 412 43.4
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 6.3e-65 252.3 385 47.3
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 1.4e-64 251.1 385 44.2
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 1.4e-64 251.1 322 51.2
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 4.5e-63 246.1 381 47.2
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.2e-62 243.8 387 45.2
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 5.0e-62 242.7 385 43.6
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 2.5e-61 240.4 386 43.3
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 3.2e-61 240.0 365 50.7
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 5.5e-61 239.2 326 47.9
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 9.4e-61 238.4 387 43.2
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 9.4e-61 238.4 387 43.2
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 6.1e-60 235.7 386 46.1
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 6.1e-60 235.7 386 46.1
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 1.4e-59 234.6 397 46.6
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 4.4e-58 229.6 409 47.7
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 5.7e-58 229.2 351 42.5
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 7.4e-58 228.8 380 42.6
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 9.1e-56 221.9 386 42.7
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 1.5e-55 221.1 310 47.1
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 2.9e-54 216.9 401 46.6
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 1.2e-52 211.5 401 42.4
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 8.2e-49 198.7 389 37.5
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 1.5e-45 188.0 353 39.1
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 6.1e-44 182.6 376 45.2
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 6.1e-44 182.6 402 39.8
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 9.1e-40 168.7 285 42.5
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 1.0e-38 165.2 280 42.5
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 1.3e-38 164.9 212 48.6
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 2.5e-37 160.6 402 38.6
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 1.0e-35 155.2 353 34.8
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 6.8e-35 152.5 403 35.2
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 1.8e-32 144.4 276 41.7
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 2.4e-32 144.1 353 32.0
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 1.3e-30 138.3 417 35.5
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 1.3e-30 138.3 417 35.5
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 3.0e-27 127.1 216 41.7
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 1.0e-22 112.1 388 32.0
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 6.6e-14 82.8 87 55.2
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 8.6e-14 82.4 328 29.3
Glyma.01G017150 Glycine max HOM05D006409 ORTHO05D008250 1.2e-12 78.6 107 43.0
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 2.8e-12 77.4 91 51.6
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 5.8e-10 69.7 73 53.4
AagrBONN_evm.TU.Sc2ySwM_344.1629 Anthoceros agrestis HOM05D006409 ORTHO05D008250 1.3e-06 58.5 272 27.6
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 1.7e-06 58.2 139 32.4


User provided reference genes

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