Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 5.0e-45 184.1 95 100.0
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 2.7e-35 151.8 89 83.1
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 8.2e-32 140.2 92 76.1
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.9e-29 131.7 85 77.6
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 8.5e-29 130.2 93 75.3
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.1e-28 129.8 85 76.5
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 3.2e-28 128.3 85 75.3
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 3.2e-28 128.3 85 76.5
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.2e-28 127.9 84 76.2
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.2e-28 127.9 90 70.0
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 7.2e-28 127.1 92 71.7
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 9.4e-28 126.7 85 71.8
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 1.6e-27 125.9 85 70.6
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.6e-27 125.9 83 73.5
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 2.1e-27 125.6 84 71.4
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 2.7e-27 125.2 83 75.9
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.7e-27 125.2 83 73.5
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.7e-27 125.2 90 70.0
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.6e-27 124.8 85 70.6
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 3.6e-27 124.8 85 74.1
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.6e-27 124.8 83 72.3
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 4.7e-27 124.4 84 72.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 4.7e-27 124.4 89 67.4
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 8.0e-27 123.6 88 68.2
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 8.0e-27 123.6 94 67.0
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 1.0e-26 123.2 90 65.6
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.0e-26 123.2 82 73.2
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.8e-26 122.5 88 68.2
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 3.0e-26 121.7 83 71.1
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 3.0e-26 121.7 83 72.3
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 3.0e-26 121.7 83 73.5
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 3.0e-26 121.7 83 69.9
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 3.0e-26 121.7 83 69.9
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 3.0e-26 121.7 83 69.9
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.2e-26 120.9 83 69.9
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 5.2e-26 120.9 86 69.8
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 6.7e-26 120.6 87 69.0
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 8.8e-26 120.2 84 67.9
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 8.8e-26 120.2 83 71.1
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 8.8e-26 120.2 89 67.4
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.5e-25 119.4 83 69.9
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.0e-25 119.0 91 62.6
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.0e-25 119.0 91 62.6
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 2.6e-25 118.6 89 68.5
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 3.3e-25 118.2 91 67.0
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 3.3e-25 118.2 86 66.3
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 3.3e-25 118.2 84 73.8
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 5.7e-25 117.5 93 61.3
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 7.5e-25 117.1 93 68.8
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 7.5e-25 117.1 82 72.0
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 7.5e-25 117.1 83 66.3
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 7.5e-25 117.1 89 68.5
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 9.7e-25 116.7 93 63.4
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 9.7e-25 116.7 88 62.5
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.3e-24 116.3 82 69.5
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-24 116.3 91 68.1
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-24 116.3 91 67.0
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.3e-24 116.3 91 67.0
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.3e-24 116.3 88 64.8
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 1.7e-24 115.9 89 65.2
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.2e-24 115.5 84 69.0
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 2.2e-24 115.5 93 64.5
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 2.8e-24 115.2 84 65.5
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.8e-24 115.2 91 60.4
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.8e-24 115.2 83 68.7
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.8e-24 115.2 88 64.8
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 3.7e-24 114.8 86 67.4
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 8.2e-24 113.6 84 64.3
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 8.2e-24 113.6 92 63.0
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.4e-23 112.8 89 60.7
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.4e-23 112.8 89 64.0
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.8e-23 112.5 83 63.9
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.8e-23 112.5 91 58.2
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.0e-23 110.5 91 58.2
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 9.1e-23 110.2 85 63.5
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 9.1e-23 110.2 83 63.9
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.2e-22 109.8 83 61.4
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.2e-22 109.8 93 55.9
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.6e-22 109.4 78 70.5
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.7e-22 108.6 92 54.3
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 4.5e-22 107.8 87 55.2
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 4.5e-22 107.8 87 55.2
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 7.7e-22 107.1 89 55.1
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 1.0e-21 106.7 86 59.3
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.0e-21 106.7 92 54.3
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.0e-21 106.7 85 60.0
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.7e-21 105.9 81 63.0
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.2e-21 105.5 84 60.7
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 8.5e-21 103.6 89 58.4
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 4.2e-20 101.3 80 66.2
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.2e-20 101.3 84 58.3
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.5e-20 100.9 78 65.4
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 9.4e-20 100.1 69 72.5
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.6e-19 99.4 80 61.2
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.6e-19 98.2 69 69.6
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 3.0e-18 95.1 89 50.6
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 4.0e-18 94.7 83 56.6
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 8.8e-18 93.6 89 50.6
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.2e-17 93.2 83 55.4
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.2e-17 93.2 83 54.2
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 2.6e-17 92.0 83 56.6
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 3.4e-17 91.7 83 55.4
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 4.4e-17 91.3 82 54.9
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 5.7e-17 90.9 80 56.2
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 7.5e-17 90.5 83 55.4
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.5e-17 90.5 64 70.3
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 9.8e-17 90.1 81 55.6
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-16 89.7 82 52.4
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.7e-16 89.4 61 73.8
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 1.7e-16 89.4 82 52.4
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 3.7e-16 88.2 81 55.6
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-16 88.2 82 51.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 3.7e-16 88.2 82 51.2
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 3.7e-16 88.2 75 60.0
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 6.3e-16 87.4 82 51.2
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 6.3e-16 87.4 82 52.4
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 6.3e-16 87.4 82 51.2
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 8.3e-16 87.0 82 51.2
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 8.3e-16 87.0 82 51.2
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 8.3e-16 87.0 82 51.2
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 8.3e-16 87.0 82 51.2
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.4e-15 86.3 82 51.2
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.4e-15 86.3 82 51.2
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.8e-15 85.9 62 66.1
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 4.1e-15 84.7 82 51.2
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 7.0e-15 84.0 82 51.2
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 7.0e-15 84.0 82 51.2
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 7.0e-15 84.0 82 50.0
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 9.1e-15 83.6 82 50.0
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 9.1e-15 83.6 82 48.8
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 9.1e-15 83.6 82 50.0
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 9.1e-15 83.6 82 50.0
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 4.5e-14 81.3 84 51.2
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.7e-14 80.5 86 51.2
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.3e-13 79.7 60 61.7
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.3e-13 79.7 81 54.3
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.1e-12 76.6 88 50.0
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 1.5e-12 76.3 58 63.8
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 2.5e-12 75.5 78 50.0
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 2.5e-12 75.5 78 50.0
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 3.2e-12 75.1 78 50.0
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 7.2e-12 73.9 78 48.7
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.0e-10 70.1 80 41.2
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 3.0e-10 68.6 73 47.9
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 7.5e-09 63.9 56 66.1
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-08 61.6 82 43.9
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 2.4e-07 58.9 33 84.8
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 7.0e-07 57.4 65 43.1
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.0e-06 55.8 80 40.0
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 2.0e-06 55.8 80 35.0


User provided reference genes

Program Settings