Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 4.7e-46 187.6 99 100.0
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 9.8e-36 153.3 98 82.7
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 1.1e-34 149.8 99 80.8
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 1.6e-33 146.0 88 85.2
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 2.9e-32 141.7 95 80.0
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 6.6e-32 140.6 93 79.6
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 8.6e-32 140.2 95 78.9
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 1.5e-31 139.4 95 80.0
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 4.3e-31 137.9 93 75.3
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 5.6e-31 137.5 93 76.3
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 5.6e-31 137.5 99 76.8
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 5.6e-31 137.5 97 75.3
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 7.3e-31 137.1 92 78.3
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 9.5e-31 136.7 99 73.7
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.2e-30 136.3 93 78.5
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.2e-30 136.3 93 78.5
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 1.2e-30 136.3 93 75.3
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 2.1e-30 135.6 97 75.3
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 2.8e-30 135.2 92 76.1
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 2.8e-30 135.2 94 75.5
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 2.8e-30 135.2 94 78.7
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 3.6e-30 134.8 94 78.7
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 3.6e-30 134.8 93 77.4
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 3.6e-30 134.8 93 75.3
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 3.6e-30 134.8 94 78.7
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 3.6e-30 134.8 94 78.7
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 6.1e-30 134.0 92 76.1
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 6.1e-30 134.0 92 76.1
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 8.0e-30 133.7 92 76.1
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.0e-29 133.3 87 81.6
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 1.4e-29 132.9 88 80.7
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 1.4e-29 132.9 92 79.3
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 1.8e-29 132.5 89 77.5
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 2.3e-29 132.1 97 72.2
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 5.2e-29 131.0 98 73.5
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 6.8e-29 130.6 84 82.1
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 8.9e-29 130.2 94 74.5
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 4.4e-28 127.9 92 73.9
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 9.8e-28 126.7 94 73.4
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 9.8e-28 126.7 90 76.7
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 1.3e-27 126.3 95 71.6
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 1.3e-27 126.3 89 76.4
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 1.7e-27 125.9 86 79.1
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 2.2e-27 125.6 97 69.1
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 2.9e-27 125.2 91 73.6
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 2.9e-27 125.2 93 73.1
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 3.7e-27 124.8 92 70.7
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 3.7e-27 124.8 80 80.0
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 4.9e-27 124.4 93 68.8
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 6.4e-27 124.0 92 69.6
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 6.4e-27 124.0 93 76.3
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 8.3e-27 123.6 91 74.7
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 8.3e-27 123.6 91 70.3
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 1.1e-26 123.2 96 68.8
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 2.4e-26 122.1 91 73.6
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 4.1e-26 121.3 95 67.4
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 7.0e-26 120.6 92 73.9
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 9.2e-26 120.2 86 73.3
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 1.2e-25 119.8 93 68.8
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 1.6e-25 119.4 88 70.5
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 1.6e-25 119.4 80 76.2
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 2.7e-25 118.6 93 69.9
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 2.7e-25 118.6 92 68.5
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 3.5e-25 118.2 78 78.2
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 4.6e-25 117.9 93 68.8
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 4.6e-25 117.9 80 75.0
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 5.9e-25 117.5 89 68.5
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 7.8e-25 117.1 93 68.8
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 7.8e-25 117.1 91 69.2
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 7.8e-25 117.1 92 69.6
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 1.0e-24 116.7 85 71.8
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 1.0e-24 116.7 88 71.6
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 1.7e-24 115.9 93 66.7
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 2.3e-24 115.5 86 70.9
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.3e-24 115.5 77 79.2
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 3.0e-24 115.2 89 69.7
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 3.0e-24 115.2 89 69.7
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 3.9e-24 114.8 92 63.0
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 3.9e-24 114.8 92 63.0
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 5.0e-24 114.4 92 68.5
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 8.6e-24 113.6 93 67.7
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 8.6e-24 113.6 92 67.4
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 3.3e-23 111.7 92 66.3
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 4.3e-23 111.3 90 68.9
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 4.3e-23 111.3 90 68.9
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 4.3e-23 111.3 88 69.3
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 5.6e-23 110.9 90 68.9
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 7.3e-23 110.5 92 63.0
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 9.5e-23 110.2 90 67.8
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 1.6e-22 109.4 92 65.2
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 2.1e-22 109.0 92 62.0
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 2.8e-22 108.6 82 69.5
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 3.6e-22 108.2 86 64.0
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 6.2e-22 107.5 92 66.3
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 1.1e-21 106.7 75 76.0
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 1.8e-21 105.9 68 86.8
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 4.0e-21 104.8 74 73.0
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 8.9e-21 103.6 82 63.4
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 2.0e-20 102.4 76 68.4
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 2.0e-20 102.4 72 75.0
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 5.8e-20 100.9 82 62.2
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 6.4e-19 97.4 67 76.1
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-17 93.2 63 73.0
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 4.6e-17 91.3 86 55.8
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 7.8e-17 90.5 85 61.2
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 8.6e-16 87.0 66 72.7
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 5.6e-15 84.3 70 62.9
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 1.2e-14 83.2 71 66.2
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 5.2e-13 77.8 72 56.9
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 1.7e-08 62.8 80 42.5


User provided reference genes

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