Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 1.9e-236 822.0 387 100.0
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.0e-229 799.7 387 97.4
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 6.5e-176 620.9 323 86.4
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 8.8e-173 610.5 323 85.1
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 5.5e-167 591.3 318 83.0
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 2.0e-164 582.8 318 82.1
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 7.4e-164 580.9 329 79.3
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 1.3e-163 580.1 323 78.3
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.2e-163 579.3 329 79.0
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 4.8e-163 578.2 323 79.9
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.2e-163 577.4 329 79.0
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.8e-162 576.2 318 80.2
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 3.1e-162 575.5 319 80.6
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 6.9e-162 574.3 318 81.8
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.5e-161 573.2 323 78.6
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 2.0e-161 572.8 323 78.9
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 2.6e-161 572.4 322 78.6
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 3.4e-161 572.0 323 79.3
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 5.9e-161 571.2 323 79.9
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 7.7e-161 570.9 319 79.0
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 1.7e-160 569.7 320 77.5
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 6.5e-160 567.8 319 79.6
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 2.5e-159 565.8 320 78.4
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.2e-158 563.5 319 78.7
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 2.1e-158 562.8 318 81.1
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 2.1e-158 562.8 323 76.5
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.6e-158 562.0 320 78.4
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.0e-157 560.5 323 77.4
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 3.0e-157 558.9 320 77.5
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 3.0e-157 558.9 319 78.4
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.9e-157 558.5 319 79.3
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 3.9e-157 558.5 324 77.2
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 8.8e-157 557.4 324 75.9
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 1.5e-156 556.6 319 77.1
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 1.5e-156 556.6 321 79.1
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 2.0e-156 556.2 319 77.4
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 9.7e-156 553.9 321 77.6
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 2.8e-155 552.4 319 78.4
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.7e-155 552.0 318 78.3
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 6.3e-155 551.2 321 75.7
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 8.2e-155 550.8 321 78.2
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 1.1e-154 550.4 318 77.4
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 3.1e-154 548.9 321 76.3
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 3.1e-154 548.9 320 77.2
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 5.3e-154 548.1 320 76.2
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 5.3e-154 548.1 325 77.2
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 5.3e-154 548.1 311 78.8
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 7.0e-154 547.7 320 75.6
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 9.1e-154 547.4 318 77.7
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 1.2e-153 547.0 326 74.5
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.2e-153 547.0 320 75.3
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 2.0e-153 546.2 318 77.7
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 3.5e-153 545.4 319 76.2
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 3.5e-153 545.4 319 77.1
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 4.5e-153 545.0 315 77.1
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.5e-153 545.0 318 77.4
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 4.5e-153 545.0 318 77.4
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 5.9e-153 544.7 316 76.3
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.9e-153 544.7 320 75.9
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.0e-152 543.9 323 75.2
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 1.3e-152 543.5 318 76.1
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 2.2e-152 542.7 320 75.3
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 2.9e-152 542.3 321 75.4
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 5.0e-152 541.6 318 76.7
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 6.5e-152 541.2 314 76.1
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.9e-151 539.7 319 76.2
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.5e-151 539.3 320 75.9
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 3.2e-151 538.9 321 76.9
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 4.2e-151 538.5 318 75.5
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 4.2e-151 538.5 319 75.9
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 7.2e-151 537.7 320 75.6
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.1e-150 536.2 367 67.0
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 2.7e-150 535.8 320 75.3
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 3.6e-150 535.4 319 75.2
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 3.6e-150 535.4 319 74.9
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 4.7e-150 535.0 320 75.9
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.0e-149 533.9 317 77.0
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 1.0e-149 533.9 316 77.2
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 1.4e-149 533.5 319 75.2
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 1.8e-149 533.1 321 75.7
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.3e-149 532.7 314 74.2
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 2.3e-149 532.7 317 76.0
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.0e-149 532.3 318 73.3
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 3.0e-149 532.3 321 76.3
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 6.7e-149 531.2 314 74.5
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 6.7e-149 531.2 320 74.1
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 9.7e-148 527.3 318 74.8
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 2.8e-147 525.8 319 76.2
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 8.2e-147 524.2 318 74.5
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 3.1e-146 522.3 303 75.2
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 3.1e-146 522.3 315 74.3
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.6e-145 520.0 318 70.8
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.6e-145 520.0 354 67.5
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 1.6e-145 520.0 318 74.5
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 2.0e-145 519.6 320 71.6
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 3.5e-145 518.8 319 72.7
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 5.9e-145 518.1 319 72.4
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 1.7e-144 516.5 303 74.6
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.2e-144 516.2 318 71.7
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 2.9e-144 515.8 314 73.2
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.9e-144 515.8 318 71.7
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 5.0e-144 515.0 303 74.3
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 6.5e-144 514.6 318 73.3
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.9e-143 513.1 303 75.2
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 4.2e-143 511.9 303 75.2
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 5.5e-143 511.5 303 73.9
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 7.2e-143 511.1 303 73.6
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 1.2e-142 510.4 303 75.2
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.2e-142 510.4 308 72.7
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 6.1e-142 508.1 303 73.3
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.4e-141 506.9 303 72.6
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.4e-141 506.9 318 68.2
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.8e-141 506.5 303 74.6
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.8e-139 498.4 302 73.8
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 6.3e-139 498.0 301 71.8
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.1e-138 497.3 288 77.1
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 4.1e-138 495.4 319 73.0
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.6e-137 493.4 295 73.2
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.0e-137 493.0 319 69.6
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 2.0e-137 493.0 318 67.3
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 2.3e-136 489.6 304 68.8
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 5.5e-135 485.0 318 67.3
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 3.0e-133 479.2 303 71.3
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 2.0e-132 476.5 319 69.0
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.1e-130 470.7 273 75.1
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.8e-128 462.2 294 72.8
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 2.5e-127 459.5 289 70.9
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 2.8e-126 456.1 317 64.0
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 6.8e-125 451.4 315 64.1
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.0e-124 449.9 309 63.4
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 3.4e-124 449.1 318 63.8
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.7e-120 436.8 313 64.5
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.0e-118 427.9 322 62.7
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 8.0e-118 427.9 322 62.7
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 4.0e-117 425.6 311 59.8
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 3.0e-112 409.5 325 55.1
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.7e-110 402.1 300 64.3
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.8e-109 400.2 216 81.0
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 2.6e-108 396.4 306 58.2
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 2.3e-104 383.3 225 73.8
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 2.9e-99 366.3 306 56.9
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 4.7e-94 349.0 308 53.6
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 1.1e-87 327.8 274 58.8
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 1.4e-77 294.3 181 74.0
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 7.1e-74 282.0 307 47.2
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.1e-66 258.1 262 49.6
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 3.7e-54 216.5 134 75.4
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 5.5e-50 202.6 126 66.7
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.5e-47 194.5 117 74.4
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 4.5e-44 183.0 379 32.2
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 8.8e-40 168.7 327 33.0
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 8.8e-32 142.1 242 36.8
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 2.2e-30 137.5 359 29.2
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.4e-29 134.8 98 60.2
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 5.2e-16 89.7 74 62.2
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.5e-15 88.2 58 72.4


User provided reference genes

Program Settings