Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 0.0e+00 1173.3 629 100.0
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 2.9e-173 612.8 663 56.9
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.2e-158 564.3 639 55.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 1.1e-156 557.8 676 52.1
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 5.1e-154 548.9 692 51.7
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 5.1e-154 548.9 649 53.9
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 5.1e-154 548.9 654 53.8
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 2.6e-150 536.6 674 52.1
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 7.9e-147 525.0 681 49.8
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 8.7e-146 521.5 681 49.2
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.3e-144 517.7 668 50.4
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.8e-144 515.8 687 50.9
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 4.0e-143 512.7 652 53.1
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.3e-143 512.3 672 49.7
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 6.9e-143 511.9 674 49.6
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 2.0e-142 510.4 636 51.4
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 4.9e-141 505.8 672 51.0
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.9e-141 505.8 687 50.4
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 1.1e-140 504.6 686 50.1
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.4e-140 504.2 687 49.8
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 5.5e-140 502.3 661 51.3
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.9e-138 496.1 687 49.6
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 5.1e-138 495.7 675 47.9
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.9e-137 493.8 627 51.7
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.9e-137 493.8 565 54.2
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 4.3e-137 492.7 673 47.8
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 7.4e-137 491.9 644 49.8
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 2.6e-134 483.4 633 49.8
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 4.5e-134 482.6 653 49.0
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 1.3e-133 481.1 691 48.2
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 4.9e-133 479.2 689 47.8
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 6.5e-133 478.8 554 55.2
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 3.2e-132 476.5 651 49.6
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 7.1e-132 475.3 585 52.1
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 9.3e-132 474.9 699 47.6
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.2e-131 474.6 585 51.8
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.1e-131 473.8 701 47.5
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 6.7e-130 468.8 688 46.8
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 3.3e-129 466.5 585 51.5
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 5.7e-129 465.7 637 47.3
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 1.6e-128 464.2 596 50.5
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.4e-127 461.1 663 48.0
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 1.4e-127 461.1 669 46.3
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.5e-126 457.6 565 52.2
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.3e-125 454.5 595 50.4
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 1.4e-124 451.1 616 48.1
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 4.5e-118 429.5 710 42.8
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 1.7e-117 427.6 687 44.4
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 8.5e-117 425.2 602 45.2
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 3.2e-116 423.3 438 57.5
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 6.1e-115 419.1 634 46.1
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 4.8e-112 409.5 612 45.9
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 3.6e-107 393.3 434 53.5
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 3.3e-105 386.7 310 69.4
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 5.3e-95 352.8 466 49.6
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 2.0e-89 334.3 529 43.5
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 7.5e-89 332.4 483 48.7
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 8.3e-88 328.9 477 48.4
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 3.4e-81 307.0 289 59.5
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 1.7e-80 304.7 521 42.6
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 3.1e-79 300.4 552 42.0
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 7.8e-78 295.8 317 53.0
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.0e-77 295.4 278 57.9
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 2.5e-76 290.8 431 47.6
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.8e-71 274.6 623 36.1
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 8.9e-66 255.8 656 35.5
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 1.3e-61 241.9 217 60.8
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.7e-56 223.8 230 53.0
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.6e-51 208.4 301 42.2
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 2.9e-48 197.6 379 40.9
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 1.1e-44 185.7 395 37.7
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.7e-37 161.8 203 52.2
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 3.3e-36 157.5 138 65.2
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.3e-36 156.4 203 43.3
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 1.6e-35 155.2 303 36.0
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 4.5e-33 147.1 469 33.7
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 7.6e-33 146.4 147 53.1
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 3.5e-30 137.5 145 50.3
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.3e-29 135.6 239 35.6
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.9e-29 134.0 314 31.8
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.4e-28 129.8 188 36.7
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.4e-28 129.8 188 36.7
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 4.8e-27 127.1 192 40.1
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.2e-27 126.7 189 38.1
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.6e-20 103.6 288 28.5
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 2.1e-19 101.7 118 51.7
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.0e-16 92.8 214 29.9
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 3.5e-14 84.3 424 28.1
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 6.0e-14 83.6 287 25.1
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.0e-13 82.8 230 27.4
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.3e-13 82.4 251 27.5
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 3.9e-13 80.9 187 28.9
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 3.9e-13 80.9 251 26.3
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 6.7e-13 80.1 238 27.3
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 6.7e-13 80.1 238 27.3
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 8.7e-13 79.7 187 28.9
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.1e-12 79.3 125 39.2
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.1e-12 79.3 288 25.3
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.1e-12 79.3 217 28.1
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.9e-12 78.6 283 25.1
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 3.3e-12 77.8 187 28.3
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 4.3e-12 77.4 295 24.4
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 4.3e-12 77.4 202 26.2
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 5.7e-12 77.0 231 26.0
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 7.4e-12 76.6 217 26.3
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 9.7e-12 76.3 252 25.0
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.2e-11 75.1 219 25.6
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 2.2e-11 75.1 286 25.2
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 2.8e-11 74.7 279 24.0
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 2.8e-11 74.7 215 26.0
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 3.7e-11 74.3 221 26.7
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 4.8e-11 73.9 257 25.7
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 4.8e-11 73.9 219 26.5
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 8.2e-11 73.2 101 46.5
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 1.1e-10 72.8 293 23.5
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.1e-10 72.8 205 27.8
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 1.4e-10 72.4 287 24.4
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 2.4e-10 71.6 245 23.7
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 3.1e-10 71.2 251 26.3
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 5.3e-10 70.5 223 26.5
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 5.3e-10 70.5 291 22.3
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 5.3e-10 70.5 217 24.0
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 6.9e-10 70.1 187 26.2
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 6.9e-10 70.1 211 25.6
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 1.2e-09 69.3 287 23.7
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.2e-09 69.3 218 23.9
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 2.0e-09 68.6 270 23.0
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.5e-09 67.4 233 26.6
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 5.9e-09 67.0 217 27.2
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 5.9e-09 67.0 217 24.9
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 7.7e-09 66.6 267 23.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 7.7e-09 66.6 270 23.0
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.3e-08 65.9 246 26.0
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 5.0e-08 63.9 215 22.8
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 6.5e-08 63.5 207 25.6
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.5e-08 63.5 217 23.5
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 8.5e-08 63.2 243 23.0
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.1e-07 62.8 211 23.2
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 4.2e-07 60.8 218 23.9
Actinidia36758 Actinidia chinensis HOM05D007670 ORTHO05D009646 5.5e-07 60.5 76 51.3
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 5.5e-07 60.5 197 26.9
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 5.5e-07 60.5 232 24.1
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.6e-06 58.9 286 23.4
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 1.6e-06 58.9 287 22.0
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.1e-06 58.5 289 23.2
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 6.1e-06 57.0 442 21.7
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 6.1e-06 57.0 442 21.7
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 7.9e-06 56.6 257 22.6


User provided reference genes

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