Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 0.0e+00 2225.7 1160 100.0
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 0.0e+00 2035.4 1193 90.4
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 0.0e+00 1482.2 1172 68.6
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 0.0e+00 1322.4 1197 64.7
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1160.2 1187 57.0
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 0.0e+00 1148.3 1184 60.2
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 0.0e+00 1134.0 1173 57.1
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 0.0e+00 1123.2 1179 58.5
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1121.7 1174 56.9
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 0.0e+00 1115.9 1156 59.3
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1104.4 1187 57.4
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1097.4 1194 55.3
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1079.7 1252 52.8
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 0.0e+00 1079.3 1171 54.1
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1076.2 1238 55.7
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 2.0e-305 1052.7 1184 53.5
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 1.4e-303 1046.6 1166 52.7
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.5e-300 1036.6 987 59.9
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 6.4e-296 1021.1 1172 51.5
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 1.1e-295 1020.4 1179 53.7
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 1.6e-291 1006.5 1214 53.1
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 4.5e-289 998.4 1202 50.7
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 5.8e-289 998.0 1174 51.6
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 2.9e-288 995.7 1129 52.4
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 4.6e-286 988.4 1161 51.8
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.1e-285 984.9 1188 49.9
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.1e-284 983.8 1225 50.5
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 8.2e-283 977.6 1171 50.6
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.5e-276 956.8 1214 48.5
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 5.3e-274 948.3 1184 48.9
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.9e-271 939.9 1174 49.4
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 4.2e-271 938.7 1174 49.4
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 1.6e-270 936.8 1166 49.7
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 4.6e-270 935.3 1200 47.9
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 7.2e-263 911.4 1230 46.5
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 9.4e-263 911.0 1194 47.8
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 2.3e-261 906.4 1184 48.3
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.7e-259 900.2 915 54.0
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 2.4e-258 896.3 1186 46.5
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 8.0e-254 881.3 1193 46.4
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 2.6e-252 876.3 1212 45.6
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 4.4e-252 875.5 1198 45.8
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 5.9e-249 865.1 1199 47.0
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 8.5e-248 861.3 1209 46.7
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 5.2e-245 852.0 1212 44.4
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 1.2e-244 850.9 1179 46.1
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 4.4e-244 849.0 1173 46.2
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.7e-243 847.0 1143 45.8
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 2.4e-242 843.2 1202 45.3
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 2.0e-241 840.1 1174 44.9
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 1.3e-240 837.4 1198 45.1
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 2.3e-240 836.6 1136 45.1
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 8.6e-240 834.7 979 50.7
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 2.8e-238 829.7 1172 45.1
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 4.0e-237 825.9 1180 45.3
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 8.8e-237 824.7 1159 45.5
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 8.3e-235 818.1 1172 44.8
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 3.1e-234 816.2 1163 45.2
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 4.5e-233 812.4 1198 44.7
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.3e-232 810.8 1216 43.8
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 8.9e-229 798.1 1193 43.8
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 2.6e-228 796.6 561 69.5
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 9.2e-226 788.1 1168 42.8
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 5.9e-225 785.4 562 68.1
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 1.1e-223 781.2 1189 42.5
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 2.0e-220 770.4 1169 43.0
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 3.4e-220 769.6 1171 43.1
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 3.2e-218 763.1 977 46.1
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 1.2e-217 761.1 1159 43.7
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 4.6e-217 759.2 938 46.7
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 7.8e-217 758.4 1174 43.4
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 3.0e-216 756.5 1143 43.3
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 6.6e-216 755.4 1081 45.7
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 1.5e-215 754.2 1156 42.2
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 2.5e-215 753.4 1176 42.5
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.6e-214 750.7 1170 43.0
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 3.1e-213 746.5 1178 42.2
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 5.2e-213 745.7 1159 42.0
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.2e-212 744.6 1048 44.8
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 4.6e-209 732.6 1060 42.1
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 6.0e-209 732.3 1050 44.7
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 7.8e-209 731.9 1154 41.2
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 3.9e-208 729.6 1072 44.5
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.2e-206 724.5 1160 42.2
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.6e-206 724.2 1168 42.0
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.8e-206 723.4 1199 42.8
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 2.8e-206 723.4 1009 46.2
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 8.1e-206 721.8 1127 41.4
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 7.6e-204 715.3 1145 40.1
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 2.9e-203 713.4 1144 40.2
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 4.9e-203 712.6 851 49.6
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 2.7e-201 706.8 1213 40.9
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 1.9e-199 700.7 556 62.2
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 7.3e-199 698.7 1142 40.1
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.7e-192 677.6 1160 43.5
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 3.8e-187 659.8 1065 38.9
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 2.7e-185 653.7 1174 38.3
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 1.1e-178 631.7 1103 38.0
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 1.5e-175 621.3 574 54.0
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 5.6e-175 619.4 1092 39.7
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 1.5e-164 584.7 961 42.0
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 2.2e-150 537.7 1216 35.0
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.7e-142 510.4 514 54.5
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.8e-142 510.0 955 41.3
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 7.2e-138 496.1 313 74.8
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 5.2e-136 490.0 931 38.7
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 5.3e-133 479.9 741 39.0
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 1.4e-128 465.3 447 53.7
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 8.6e-123 446.0 561 45.8
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 9.5e-122 442.6 552 45.8
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 1.8e-120 438.3 816 37.1
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 3.4e-119 434.1 507 45.0
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 2.9e-115 421.0 532 44.5
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 7.3e-106 389.8 851 37.3
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 5.1e-83 313.9 227 68.7
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 4.3e-74 284.3 221 62.4
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.8e-72 278.9 790 32.2
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 2.1e-68 265.4 782 30.2
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.7e-35 154.1 284 37.0
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.2e-31 143.3 650 29.5
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 1.7e-30 139.4 635 30.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.5e-21 109.8 91 61.5
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 2.7e-20 105.5 155 48.4
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 5.2e-19 101.3 167 38.3
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 3.4e-18 98.6 206 32.0
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 8.3e-17 94.0 138 50.7
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 3.1e-16 92.0 102 48.0
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 4.1e-16 91.7 78 60.3
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 4.1e-16 91.7 84 52.4
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.6e-15 89.7 53 73.6
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 2.0e-15 89.4 56 67.9
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 3.8e-14 85.1 53 69.8
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.1e-13 83.6 160 46.9


User provided reference genes

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