Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 5.6e-206 720.7 364 100.0
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.7e-82 308.5 186 88.2
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.0e-69 268.1 202 72.3
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.3e-61 241.1 185 69.7
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.2e-61 240.4 186 69.9
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.1e-57 228.0 185 65.9
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 9.7e-57 224.9 187 67.4
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.2e-56 223.8 188 65.4
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.8e-56 222.6 189 66.1
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 8.2e-56 221.9 189 65.1
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.1e-55 221.5 186 66.7
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.1e-55 221.5 187 62.6
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.8e-55 220.7 195 64.1
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 3.5e-54 216.5 188 65.4
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.5e-54 216.5 186 61.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 4.5e-54 216.1 185 63.2
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.0e-53 214.9 186 62.4
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.3e-53 214.5 187 61.5
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.8e-53 213.0 190 60.5
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 4.2e-52 209.5 184 62.5
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.5e-52 209.1 186 63.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 2.7e-51 206.8 186 62.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.7e-51 206.8 177 63.3
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 3.6e-51 206.5 185 63.2
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 4.7e-51 206.1 196 60.2
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 6.1e-51 205.7 185 62.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 4.0e-50 203.0 176 60.8
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 4.0e-50 203.0 174 62.6
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.8e-50 201.8 183 63.4
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.6e-49 200.3 184 61.4
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 9.8e-49 198.4 183 62.3
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.2e-48 197.2 183 61.7
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.2e-48 197.2 183 61.7
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.7e-48 196.4 183 61.7
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.7e-48 196.4 192 59.9
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 6.3e-48 195.7 183 60.7
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.1e-47 194.9 192 59.4
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.1e-47 194.9 192 59.4
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.4e-47 193.7 188 59.6
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 7.0e-47 192.2 185 57.8
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.6e-46 191.0 199 58.8
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.3e-45 188.0 174 59.2
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.8e-45 186.4 174 59.2
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 2.5e-44 183.7 186 56.5
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.2e-43 181.4 182 56.0
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 4.7e-43 179.5 182 59.3
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.0e-42 178.3 174 57.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.8e-42 177.6 185 56.2
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.3e-42 177.2 185 56.2
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 8.8e-42 175.3 184 57.1
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 8.8e-42 175.3 179 54.7
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.0e-41 174.1 184 56.0
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.6e-41 173.7 165 61.8
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 7.5e-41 172.2 167 59.9
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 7.5e-41 172.2 190 55.3
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 9.8e-41 171.8 174 57.5
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.2e-40 170.6 181 54.1
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.7e-40 169.9 174 55.7
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 6.3e-40 169.1 187 54.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 8.3e-40 168.7 184 57.1
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.1e-39 168.3 185 53.0
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.1e-39 166.8 184 57.1
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 4.1e-39 166.4 186 54.8
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 7.0e-39 165.6 190 54.7
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 7.0e-39 165.6 184 56.5
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.1e-39 165.2 183 51.9
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.2e-38 164.9 183 53.6
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 5.9e-38 162.5 186 54.8
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 2.9e-37 160.2 184 51.6
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 2.9e-37 160.2 195 50.3
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.6e-37 158.7 170 57.6
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.1e-36 158.3 190 50.5
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.5e-36 157.9 171 56.1
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.5e-36 157.9 170 51.2
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.5e-36 157.1 190 48.9
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 7.2e-36 155.6 177 53.1
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 9.5e-36 155.2 184 51.1
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.2e-35 154.8 193 48.2
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.6e-35 154.5 183 53.6
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.1e-35 154.1 190 50.0
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 2.1e-35 154.1 184 50.5
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.0e-34 151.8 146 57.5
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.4e-34 151.4 181 54.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.3e-34 150.6 192 50.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.0e-34 149.8 193 47.2
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.0e-34 149.8 175 50.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-33 147.5 187 48.7
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 2.2e-32 144.1 177 52.5
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 2.9e-32 143.7 175 52.0
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 3.7e-32 143.3 193 48.7
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 4.9e-32 142.9 166 53.0
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.4e-31 141.4 169 49.7
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.8e-31 141.0 162 50.0
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.2e-30 138.3 171 50.3
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.0e-29 135.2 193 47.2
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.1e-28 131.7 130 54.6
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.1e-28 131.7 169 49.1
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 7.3e-28 129.0 164 50.6
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 4.7e-27 126.3 170 41.8
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 5.2e-26 122.9 173 46.2
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.5e-25 121.3 185 45.4
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 9.8e-25 118.6 191 45.5
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 9.8e-25 118.6 191 45.5
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.3e-24 118.2 174 47.7
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.7e-24 117.9 173 45.1
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 3.7e-24 116.7 165 47.3
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 8.3e-24 115.5 191 45.5
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.1e-23 115.2 191 45.0
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.9e-23 114.4 180 45.0
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 3.2e-23 113.6 181 46.4
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 3.2e-23 113.6 188 43.6
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 5.4e-23 112.8 170 48.8
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 5.4e-23 112.8 170 48.8
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 5.4e-23 112.8 170 48.8
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 7.0e-23 112.5 167 46.7
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-22 111.7 188 43.1
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.2e-22 111.7 167 46.1
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.2e-22 111.7 188 43.1
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.2e-22 111.7 167 45.5
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 4.6e-22 109.8 180 45.6
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 6.0e-22 109.4 192 40.6
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 6.0e-22 109.4 167 46.1
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 6.6e-21 105.9 192 41.1
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.5e-20 104.0 172 45.3
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 4.3e-20 103.2 183 43.7
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.8e-18 97.8 147 48.3
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.4e-17 93.6 166 40.4
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 3.2e-15 87.0 167 41.9
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 3.2e-15 87.0 81 59.3
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 5.4e-15 86.3 121 42.1
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 5.4e-15 86.3 160 40.0
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.3e-13 81.6 167 38.3
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.0e-13 80.5 204 35.3
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 6.6e-13 79.3 179 38.5
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.1e-10 72.0 213 32.9
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.8e-10 71.2 102 42.2
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 2.3e-10 70.9 88 45.5
Os07g0160800 Oryza sativa ssp. japonica HOM05D028995 ORTHO05D029123 8.9e-10 68.9 145 36.6
FAN16G3534 Fragaria x ananassa HOM05D028995 ORTHO05D029123 4.4e-09 66.6 114 42.1
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.7e-08 64.7 99 41.4
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.2e-08 64.3 99 43.4
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.9e-07 61.2 37 75.7
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 2.4e-07 60.8 229 28.4
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 4.1e-07 60.1 40 75.0
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.4e-07 59.7 98 37.8
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 5.4e-07 59.7 37 73.0
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 3.5e-06 57.0 37 75.7
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 6.0e-06 56.2 40 65.0


User provided reference genes

Program Settings