Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 9.2e-66 253.4 131 100.0
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 6.0e-57 224.2 116 99.1
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 2.1e-54 215.7 123 89.4
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 4.7e-54 214.5 116 94.0
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 6.2e-54 214.2 116 93.1
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 1.4e-53 213.0 116 93.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 3.1e-53 211.8 116 93.1
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 3.1e-53 211.8 116 93.1
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 4.0e-53 211.5 116 93.1
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 5.2e-53 211.1 115 92.2
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 5.2e-53 211.1 116 93.1
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 5.2e-53 211.1 116 93.1
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 5.2e-53 211.1 116 89.7
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 6.8e-53 210.7 116 92.2
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 6.8e-53 210.7 116 93.1
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 6.8e-53 210.7 116 91.4
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 8.9e-53 210.3 116 91.4
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 8.9e-53 210.3 116 94.0
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 8.9e-53 210.3 116 92.2
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 8.9e-53 210.3 116 90.5
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 1.2e-52 209.9 116 93.1
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 1.2e-52 209.9 116 91.4
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 1.2e-52 209.9 116 91.4
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.5e-52 209.5 116 92.2
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 1.5e-52 209.5 116 92.2
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 1.5e-52 209.5 116 92.2
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 2.0e-52 209.1 116 93.1
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 2.6e-52 208.8 116 92.2
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 3.4e-52 208.4 116 91.4
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 3.4e-52 208.4 116 91.4
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 4.4e-52 208.0 116 92.2
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 5.8e-52 207.6 116 90.5
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 7.6e-52 207.2 116 90.5
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 7.6e-52 207.2 116 89.7
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 9.9e-52 206.8 116 89.7
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.7e-51 206.1 116 90.5
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 8.4e-51 203.8 116 87.9
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.1e-50 203.4 116 88.8
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.1e-50 203.4 116 88.8
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.4e-50 203.0 116 89.7
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 1.4e-50 203.0 116 88.8
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 1.4e-50 203.0 116 87.9
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 1.9e-50 202.6 116 86.2
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 1.9e-50 202.6 116 87.9
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 1.9e-50 202.6 116 89.7
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 3.2e-50 201.8 116 89.7
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 4.1e-50 201.4 116 88.8
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 4.1e-50 201.4 116 89.7
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.1e-50 201.4 116 87.1
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.4e-50 201.1 116 87.1
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.4e-50 201.1 116 87.1
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 5.4e-50 201.1 116 86.2
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 5.4e-50 201.1 115 87.0
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 7.1e-50 200.7 116 85.3
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 9.2e-50 200.3 114 86.8
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 9.2e-50 200.3 116 86.2
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 9.2e-50 200.3 116 87.1
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 9.2e-50 200.3 116 87.9
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 9.2e-50 200.3 116 87.9
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 1.2e-49 199.9 116 88.8
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.6e-49 199.5 116 86.2
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.6e-49 199.5 116 86.2
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 2.1e-49 199.1 116 87.9
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 2.1e-49 199.1 116 88.8
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 2.1e-49 199.1 116 87.1
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 2.7e-49 198.7 116 86.2
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 3.5e-49 198.4 114 87.7
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 4.6e-49 198.0 116 84.5
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 6.0e-49 197.6 120 83.3
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 1.0e-48 196.8 110 89.1
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.0e-48 196.8 114 87.7
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.3e-48 196.4 116 85.3
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 1.7e-48 196.1 113 88.5
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 8.6e-48 193.7 116 82.8
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 8.6e-48 193.7 116 82.8
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 1.1e-47 193.4 116 82.8
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.1e-47 193.4 116 82.8
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 1.1e-47 193.4 116 82.8
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.1e-47 193.4 115 84.3
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 1.5e-47 193.0 116 85.3
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.5e-47 192.2 116 81.9
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 1.2e-46 189.9 115 83.5
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 1.2e-46 189.9 116 82.8
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 1.2e-46 189.9 114 81.6
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 1.2e-46 189.9 116 81.9
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.1e-46 189.1 116 80.2
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 2.1e-46 189.1 116 80.2
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 2.1e-46 189.1 116 80.2
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 2.8e-46 188.7 116 80.2
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 2.8e-46 188.7 116 80.2
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 2.8e-46 188.7 116 80.2
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 2.8e-46 188.7 116 82.8
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 8.1e-46 187.2 116 79.3
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 2.4e-45 185.7 116 81.0
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 3.1e-45 185.3 116 80.2
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 5.2e-45 184.5 114 78.9
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 6.8e-45 184.1 111 82.0
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 6.8e-45 184.1 130 73.8
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 2.0e-44 182.6 121 75.2
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 2.6e-44 182.2 144 69.4
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.4e-43 177.2 118 79.7
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 4.2e-42 174.9 116 77.6
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 2.8e-38 162.2 98 82.7
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 4.0e-37 158.3 166 56.6
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 1.1e-34 150.2 79 94.9
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.4e-34 149.8 93 82.8
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 1.2e-33 146.7 85 87.1
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.3e-27 126.7 76 82.9
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 4.9e-27 124.8 79 77.2
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 7.9e-25 117.5 63 93.7
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.6e-22 109.8 63 87.3
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.8e-22 108.2 63 87.3
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.4e-21 106.7 117 47.9
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 6.9e-21 104.4 110 50.0
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 7.6e-20 100.9 121 49.6
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 1.1e-18 97.1 111 46.8
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 2.3e-16 89.4 109 44.0
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 6.3e-14 81.3 168 33.9
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 7.4e-07 57.8 92 42.4
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 3.7e-06 55.5 32 78.1
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 8.2e-06 54.3 31 80.6
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 8.2e-06 54.3 35 68.6


User provided reference genes

Program Settings