Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 3.4e-271 937.9 557 100.0
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 8.3e-233 810.4 620 79.8
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.6e-202 709.1 556 72.7
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.6e-188 663.3 568 69.2
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 5.5e-184 648.3 559 68.5
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.3e-177 627.1 556 64.7
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.9e-173 613.2 552 64.3
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 5.7e-173 611.7 548 63.3
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 9.0e-171 604.4 568 64.3
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.0e-169 600.9 550 63.6
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.2e-167 594.0 557 63.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.8e-166 590.1 552 60.9
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 4.3e-165 585.5 563 62.5
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.3e-164 583.9 559 64.2
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 4.5e-162 575.5 554 61.6
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 5.5e-160 568.5 561 61.7
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.6e-159 567.0 549 61.4
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 6.1e-159 565.1 564 59.6
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.8e-158 563.5 547 61.6
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.9e-158 562.4 557 60.9
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.1e-157 560.8 563 59.9
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.0e-157 560.1 562 59.8
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-156 557.0 563 59.5
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.8e-156 556.2 562 59.6
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-155 553.5 563 58.4
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.5e-154 550.4 484 64.9
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 4.2e-152 542.3 555 59.1
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.6e-151 540.4 555 58.7
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 7.9e-151 538.1 561 59.7
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.1e-150 535.4 554 59.6
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.7e-149 531.9 562 58.9
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.7e-149 531.9 559 58.9
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 2.8e-148 529.6 534 58.1
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 5.3e-147 525.4 553 57.3
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 3.5e-146 522.7 539 59.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 5.9e-146 521.9 487 63.0
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 2.9e-145 519.6 543 58.2
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 5.5e-144 515.4 587 55.5
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 9.4e-144 514.6 561 56.5
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.2e-143 514.2 525 60.4
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.7e-143 513.1 582 54.8
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.3e-142 510.0 559 56.0
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 5.2e-142 508.8 556 56.7
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.7e-142 508.4 559 56.5
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.6e-141 506.5 561 56.3
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 9.7e-141 504.6 566 56.0
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 6.3e-140 501.9 561 56.3
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 5.9e-138 495.4 547 54.8
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 2.9e-137 493.0 547 53.4
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 6.5e-137 491.9 555 55.5
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.9e-136 490.3 545 54.9
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 3.6e-135 486.1 555 54.2
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 3.4e-133 479.6 558 55.6
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 4.4e-133 479.2 559 52.6
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.1e-131 474.6 560 54.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 5.4e-131 472.2 554 54.7
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 5.4e-131 472.2 536 53.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 7.0e-131 471.9 550 51.1
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 7.0e-131 471.9 561 55.1
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.5e-130 469.2 538 52.8
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.9e-130 468.8 542 52.4
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.0e-129 468.0 532 54.3
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.1e-128 464.5 555 53.9
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.2e-128 463.0 555 51.2
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 4.2e-128 462.6 554 52.9
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.7e-127 459.1 559 50.3
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 6.1e-127 458.8 555 53.2
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 3.0e-126 456.4 563 52.9
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 6.8e-126 455.3 585 50.8
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.4e-123 447.6 526 53.2
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.4e-123 447.6 557 52.2
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 2.4e-123 446.8 560 53.0
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 5.4e-123 445.7 537 50.3
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.6e-122 444.1 559 54.4
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.0e-122 443.7 567 50.4
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-120 438.0 531 50.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.9e-120 437.2 570 51.8
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.3e-120 436.4 557 51.9
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.2e-119 434.5 555 52.8
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.2e-119 434.5 585 49.7
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.8e-119 433.3 404 61.6
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 3.6e-119 433.0 446 59.9
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.4e-118 431.0 553 49.2
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 7.5e-117 425.2 549 51.7
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 8.3e-116 421.8 522 52.3
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 1.8e-115 420.6 555 49.7
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 4.1e-115 419.5 558 50.9
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.2e-114 417.9 559 51.5
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.0e-113 414.8 531 49.3
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.7e-113 414.1 559 47.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.7e-113 414.1 551 48.3
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.3e-112 409.5 557 48.8
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.6e-111 407.5 552 49.1
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 6.2e-111 405.6 571 47.3
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-110 404.4 587 47.9
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 3.7e-108 396.4 552 47.1
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.4e-107 394.4 568 46.0
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.4e-107 393.7 550 46.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-106 390.6 547 46.1
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 2.7e-106 390.2 574 46.0
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 6.0e-106 389.0 585 46.7
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.7e-105 387.5 574 46.0
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 3.9e-105 386.3 576 45.8
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 3.9e-105 386.3 556 49.1
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.1e-104 384.8 559 47.0
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.1e-104 384.8 567 45.7
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.1e-104 384.8 568 45.8
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.1e-103 380.6 567 46.0
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 4.7e-103 379.4 539 46.4
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.1e-102 378.3 539 46.8
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 5.2e-102 375.9 571 44.8
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 7.5e-101 372.1 574 44.9
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 4.9e-100 369.4 543 44.6
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 6.4e-100 369.0 566 44.9
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.9e-99 367.5 543 44.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 5.4e-99 365.9 567 44.1
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 9.2e-99 365.2 563 43.7
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.6e-98 364.4 567 43.9
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 6.0e-98 362.5 584 42.8
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 3.0e-97 360.1 568 42.6
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.9e-96 357.5 448 52.0
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.1e-95 354.0 396 56.8
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 4.4e-93 346.3 400 51.5
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 6.6e-89 332.4 586 45.1
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 7.3e-88 328.9 399 55.1
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 9.6e-88 328.6 566 42.4
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.0e-86 323.2 579 43.9
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 5.1e-81 306.2 186 88.2
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.2e-77 295.0 283 60.1
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 5.4e-75 286.2 549 41.3
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 3.5e-74 283.5 549 41.5
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 8.7e-73 278.9 420 46.7
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.9e-72 277.7 484 40.1
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.6e-72 275.4 550 40.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.8e-71 273.9 547 38.9
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.4e-69 266.9 536 39.4
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 4.9e-68 263.1 654 35.5
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.3e-65 254.2 223 61.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 1.5e-61 241.5 335 52.5
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.7e-60 238.0 433 37.4
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 8.7e-57 225.7 275 57.5
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.3e-55 221.9 418 38.5
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 8.2e-55 219.2 362 43.4
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 8.2e-55 219.2 475 37.3
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 4.1e-54 216.9 244 52.9
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.2e-51 206.8 410 37.3
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 9.3e-51 205.7 439 37.6
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 2.1e-50 204.5 491 36.7
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.6e-50 203.8 410 36.8
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.3e-49 201.8 410 37.1
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.2e-45 188.7 422 35.1
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.1e-38 164.1 275 40.0
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.9e-37 159.8 197 56.9
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.9e-35 154.8 560 30.0
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 3.0e-33 147.5 519 31.0
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 3.1e-30 137.5 436 29.6
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.0e-25 122.5 190 39.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 4.0e-25 120.6 216 38.9
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.8e-23 114.4 221 41.2
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.7e-23 114.0 233 37.3
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 1.4e-22 112.1 353 32.9
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 4.1e-22 110.5 120 55.0
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 2.0e-21 108.2 116 56.0
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 2.0e-21 108.2 217 35.9
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.5e-21 107.1 119 53.8
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.9e-20 104.4 185 45.9
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.2e-18 99.0 131 45.0
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 5.7e-16 90.1 186 45.2
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 5.7e-16 90.1 123 48.0
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 7.7e-13 79.7 125 36.0
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.1e-11 75.9 66 56.1
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 7.2e-11 73.2 42 81.0
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.6e-08 64.7 47 70.2
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.7e-08 63.5 53 62.3
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 4.9e-07 60.5 41 75.6
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 2.4e-06 58.2 54 55.6


User provided reference genes

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