Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 5.9e-54 214.2 125 100.0
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 3.1e-18 95.5 130 56.9
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.1e-15 87.0 125 54.4
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.7e-13 79.7 125 52.8
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.7e-13 79.7 123 48.8
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.7e-13 79.7 125 50.4
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 3.9e-13 78.6 125 48.0
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 1.1e-12 77.0 125 50.4
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 1.5e-12 76.6 125 49.6
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.5e-12 76.6 125 48.8
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 1.5e-12 76.6 124 50.0
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.9e-12 76.3 124 48.4
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.9e-12 76.3 125 48.0
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.5e-12 75.9 123 43.9
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 3.3e-12 75.5 125 46.4
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 3.3e-12 75.5 122 48.4
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 4.3e-12 75.1 125 47.2
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 7.3e-12 74.3 125 49.6
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.3e-12 74.3 122 48.4
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.3e-12 74.3 122 48.4
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.3e-12 74.3 122 48.4
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 9.5e-12 73.9 125 49.6
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.2e-11 73.6 129 52.7
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 1.2e-11 73.6 125 46.4
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 1.2e-11 73.6 122 47.5
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 2.1e-11 72.8 122 45.9
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 2.1e-11 72.8 122 48.4
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-11 72.8 122 48.4
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.1e-11 72.8 123 41.5
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.6e-11 72.0 125 48.8
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 3.6e-11 72.0 125 44.8
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 3.6e-11 72.0 125 46.4
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 3.6e-11 72.0 122 50.0
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 4.7e-11 71.6 124 48.4
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 4.7e-11 71.6 125 48.8
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 4.7e-11 71.6 125 48.8
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 6.2e-11 71.2 125 48.0
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 6.2e-11 71.2 121 45.5
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 6.2e-11 71.2 125 40.8
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.1e-10 70.5 125 48.0
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.3e-10 69.3 125 47.2
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 2.3e-10 69.3 125 44.8
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 3.1e-10 68.9 121 47.9
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.1e-10 68.9 122 48.4
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 4.0e-10 68.6 125 48.8
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 4.0e-10 68.6 125 48.8
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.0e-10 68.6 121 47.1
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 6.8e-10 67.8 125 46.4
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 6.8e-10 67.8 125 46.4
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 8.9e-10 67.4 125 45.6
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 8.9e-10 67.4 125 42.4
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.2e-09 67.0 125 44.0
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.5e-09 66.6 122 46.7
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 1.5e-09 66.6 124 46.8
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.5e-09 66.6 125 46.4
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 1.5e-09 66.6 125 50.4
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 2.0e-09 66.2 122 41.8
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.6e-09 65.9 122 41.8
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.6e-09 65.9 122 41.8
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.4e-09 65.5 125 42.4
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 4.4e-09 65.1 125 39.2
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 5.8e-09 64.7 125 39.2
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 9.9e-09 63.9 122 41.8
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.9e-09 63.9 125 40.8
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.9e-09 63.9 125 40.8
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 1.7e-08 63.2 125 38.4
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.2e-08 62.8 125 46.4
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 2.2e-08 62.8 125 46.4
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.2e-08 62.8 125 46.4
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.2e-08 62.8 123 45.5
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 2.2e-08 62.8 122 48.4
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 2.2e-08 62.8 125 46.4
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 2.9e-08 62.4 126 46.8
Haze_18696 Corylus avellana HOM05D003549 ORTHO05D004223 3.7e-08 62.0 31 96.8
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 4.9e-08 61.6 125 38.4
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 6.4e-08 61.2 125 44.0
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 8.3e-08 60.8 125 42.4
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 8.3e-08 60.8 122 41.8
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 8.3e-08 60.8 124 38.7
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 8.3e-08 60.8 126 45.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 8.3e-08 60.8 125 39.2
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.9e-07 59.7 125 38.4
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 2.4e-07 59.3 125 37.6
Lalb_Chr23g0273191 Lupinus albus HOM05D003549 ORTHO05D004223 2.4e-07 59.3 37 78.4
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 2.4e-07 59.3 127 45.7
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 3.2e-07 58.9 125 44.0
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.2e-07 58.9 122 40.2
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 5.4e-07 58.2 125 48.0
CSS0021629 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 7.1e-07 57.8 35 82.9
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 7.1e-07 57.8 125 45.6
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 7.1e-07 57.8 122 39.3
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 9.2e-07 57.4 127 40.2
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 9.2e-07 57.4 125 44.8
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 9.2e-07 57.4 126 45.2
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 9.2e-07 57.4 117 43.6
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 9.2e-07 57.4 122 42.6
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 9.2e-07 57.4 122 42.6
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 1.2e-06 57.0 125 47.2
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.6e-06 56.6 128 41.4
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.6e-06 56.6 125 41.6
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 2.1e-06 56.2 122 43.4
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-06 56.2 123 39.8
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-06 56.2 123 39.8
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-06 56.2 123 39.8
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-06 56.2 123 39.8
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.1e-06 56.2 120 47.5
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 2.1e-06 56.2 122 35.2
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 2.7e-06 55.8 120 40.0
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 2.7e-06 55.8 120 40.0
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 2.7e-06 55.8 120 40.0
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 2.7e-06 55.8 118 46.6
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 2.7e-06 55.8 120 40.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.7e-06 55.8 125 42.4
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 2.7e-06 55.8 122 38.5
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 3.5e-06 55.5 125 39.2
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 3.5e-06 55.5 122 39.3
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 3.5e-06 55.5 122 36.1
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 4.6e-06 55.1 125 42.4
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 4.6e-06 55.1 123 39.8
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.6e-06 55.1 123 39.8
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 4.6e-06 55.1 30 90.0
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 6.0e-06 54.7 33 81.8
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 6.0e-06 54.7 122 41.0
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 6.0e-06 54.7 95 40.0
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 6.0e-06 54.7 122 43.4
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 6.0e-06 54.7 124 37.1
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 7.8e-06 54.3 95 40.0
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 7.8e-06 54.3 124 35.5


User provided reference genes

Program Settings