Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019085 Carpinus fangiana HOM05D006711 ORTHO05D008104 8.5e-41 169.9 83 100.0
PGR044G2080 Punica granatum HOM05D006711 ORTHO05D008104 1.3e-33 146.0 80 87.5
Manes.14G068400 Manihot esculenta HOM05D006711 ORTHO05D008104 3.8e-33 144.4 80 87.5
ClCG01G014050 Citrullus lanatus HOM05D006711 ORTHO05D008104 6.5e-33 143.7 80 87.5
Eucgr.K02867 Eucalyptus grandis HOM05D006711 ORTHO05D008104 6.5e-33 143.7 80 85.0
Thecc.03G007500 Theobroma cacao HOM05D006711 ORTHO05D008104 6.5e-33 143.7 83 85.5
CsaV3_1G008300 Cucumis sativus L. HOM05D006711 ORTHO05D008104 3.2e-32 141.4 80 86.2
FvH4_5g05020 Fragaria vesca HOM05D006711 ORTHO05D008104 3.2e-32 141.4 80 85.0
FAN04G0211 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.2e-32 141.4 80 85.0
FAN08G2471 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.2e-32 141.4 80 85.0
FAN13G1278 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.2e-32 141.4 80 85.0
FAN18G1479 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.2e-32 141.4 80 85.0
FAN18G2156 Fragaria x ananassa HOM05D006711 ORTHO05D008104 3.2e-32 141.4 80 85.0
Medtr4g106700 Medicago truncatula HOM05D006711 ORTHO05D008104 3.2e-32 141.4 83 81.9
Ca_21901_v3 Cicer arietinum L. HOM05D006711 ORTHO05D008104 1.2e-31 139.4 83 80.7
Potri.012G078000 Populus trichocarpa HOM05D006711 ORTHO05D008104 1.2e-31 139.4 80 83.8
Potri.015G073300 Populus trichocarpa HOM05D006711 ORTHO05D008104 1.2e-31 139.4 80 83.8
MELO3C002246.2 Cucumis melo HOM05D006711 ORTHO05D008104 1.6e-31 139.0 80 85.0
Duzib068G0631 Durio zibethinus HOM05D006711 ORTHO05D008104 1.6e-31 139.0 83 83.1
MD06G1177900 Malus domestica HOM05D006711 ORTHO05D008104 2.7e-31 138.3 80 82.5
MD14G1184500 Malus domestica HOM05D006711 ORTHO05D008104 2.7e-31 138.3 80 82.5
Sabra15G0097500 Salix brachista HOM05D006711 ORTHO05D008104 2.7e-31 138.3 80 81.2
arahy.Tifrunner.gnm1.ann1.5NY27E Arachis hypogaea HOM05D006711 ORTHO05D008104 3.6e-31 137.9 80 83.8
THA.LOC104798980 Tarenaya hassleriana HOM05D000086 ORTHO05D008104 3.6e-31 137.9 82 82.9
Gohir.A12G275900 Gossypium hirsutum HOM05D006711 ORTHO05D008104 4.7e-31 137.5 80 83.8
Gorai.008G297100 Gossypium raimondii HOM05D006711 ORTHO05D008104 4.7e-31 137.5 80 83.8
Gohir.D12G276600 Gossypium hirsutum HOM05D006711 ORTHO05D008104 6.1e-31 137.1 80 83.8
COL.COLO4_24770 Corchorus olitorius HOM05D006711 ORTHO05D008104 7.9e-31 136.7 83 81.9
Duzib084G0075 Durio zibethinus HOM05D006711 ORTHO05D008104 7.9e-31 136.7 80 83.8
Sed0004980 Sechium edule HOM05D006711 ORTHO05D008104 7.9e-31 136.7 79 84.8
Lj4g0001750 Lotus japonicus HOM05D006711 ORTHO05D008104 1.4e-30 136.0 83 80.7
THA.LOC104821460 Tarenaya hassleriana HOM05D006711 ORTHO05D008104 1.8e-30 135.6 80 82.5
Aa31LG4G16690 Aethionema arabicum HOM05D006711 ORTHO05D008104 3.0e-30 134.8 80 80.0
AL5G27360 Arabidopsis lyrata HOM05D006711 ORTHO05D008104 3.0e-30 134.8 80 80.0
CARHR156770 Cardamine hirsuta HOM05D006711 ORTHO05D008104 3.0e-30 134.8 80 80.0
Sp5g13950 Schrenkiella parvula HOM05D006711 ORTHO05D008104 3.0e-30 134.8 80 80.0
CANSAT11G1423 Cannabis sativa HOM05D006711 ORTHO05D008104 3.9e-30 134.4 83 77.1
Thhalv10010870m.g Eutrema salsugineum HOM05D006711 ORTHO05D008104 3.9e-30 134.4 80 78.8
TWI15G0492 Tripterygium wilfordii HOM05D006711 ORTHO05D008104 3.9e-30 134.4 76 85.5
Ah.10g035450 Amaranthus hybridus HOM05D006711 ORTHO05D008104 5.1e-30 134.0 75 86.7
Psat4g057240 Pisum sativum HOM05D006711 ORTHO05D008104 6.7e-30 133.7 83 77.1
Sabra12G0055800 Salix brachista HOM05D006711 ORTHO05D008104 6.7e-30 133.7 80 80.0
TPR.G37552 Trifolium pratense HOM05D006711 ORTHO05D008104 6.7e-30 133.7 75 86.7
Aa31LG11G810 Aethionema arabicum HOM05D006711 ORTHO05D008104 8.8e-30 133.3 80 80.0
BcaC07g39289 Brassica carinata HOM05D006711 ORTHO05D008104 8.8e-30 133.3 80 80.0
A06p19610 Brassica napus HOM05D006711 ORTHO05D008104 8.8e-30 133.3 80 80.0
C08p22960 Brassica napus HOM05D006711 ORTHO05D008104 8.8e-30 133.3 80 80.0
BolC8t49933H Brassica oleracea HOM05D006711 ORTHO05D008104 8.8e-30 133.3 80 80.0
BraA06t25041Z Brassica rapa HOM05D006711 ORTHO05D008104 8.8e-30 133.3 80 80.0
Cpa.g.sc134.10 Carica papaya HOM05D006711 ORTHO05D008104 1.5e-29 132.5 78 80.8
Sc04g0001970 Simmondsia chinensis HOM05D006711 ORTHO05D008104 1.5e-29 132.5 75 86.7
Prupe.5G177100 Prunus persica HOM05D006711 ORTHO05D008104 2.0e-29 132.1 80 78.8
BcaB01g00848 Brassica carinata HOM05D006711 ORTHO05D008104 2.6e-29 131.7 80 78.8
Atru.chr9.2428 Acer truncatum HOM05D006711 ORTHO05D008104 4.4e-29 131.0 83 75.9
Ciclev10023110m.g Citrus clementina HOM05D006711 ORTHO05D008104 4.4e-29 131.0 83 75.9
AUR62031000 Chenopodium quinoa HOM05D006711 ORTHO05D008104 9.7e-29 129.8 75 84.0
CiPaw.12G024900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.3e-28 129.4 95 70.5
Hund09419 Selenicereus undatus HOM05D006711 ORTHO05D008104 1.7e-28 129.0 75 85.3
Glyma.05G035600 Glycine max HOM05D006711 ORTHO05D008104 2.2e-28 128.6 67 92.5
Phvul.003G198200 Phaseolus vulgaris HOM05D006711 ORTHO05D008104 2.2e-28 128.6 67 92.5
DCAR_011220 Daucus carota HOM05D006711 ORTHO05D008104 6.3e-28 127.1 75 81.3
Hma1.2p1_0697F.1_g204840 Hydrangea macrophylla HOM05D006711 ORTHO05D008104 1.1e-27 126.3 75 82.7
PSO478G1559 Papaver somniferum HOM05D006711 ORTHO05D008104 1.1e-27 126.3 75 82.7
Oeu059193.1 Olea europaea HOM05D006711 ORTHO05D008104 1.8e-27 125.6 75 81.3
EL10Ac5g10797 Beta vulgaris HOM05D006711 ORTHO05D008104 3.1e-27 124.8 75 80.0
Migut.N03365 Erythranthe guttata HOM05D006711 ORTHO05D008104 4.1e-27 124.4 75 81.3
Oeu047317.1 Olea europaea HOM05D006711 ORTHO05D008104 4.1e-27 124.4 75 80.0
Aqoxy3G00948 Aquilegia oxysepala HOM05D006711 ORTHO05D008104 5.3e-27 124.0 71 84.5
MBI15_g24174_MAGBIO Magnolia biondii HOM05D006711 ORTHO05D008104 5.3e-27 124.0 68 89.7
PSO017G6527 Papaver somniferum HOM05D006711 ORTHO05D008104 5.3e-27 124.0 75 82.7
PSO063G1690 Papaver somniferum HOM05D006711 ORTHO05D008104 5.3e-27 124.0 75 77.3
PSO832G1815 Papaver somniferum HOM05D006711 ORTHO05D008104 5.3e-27 124.0 75 77.3
SalBow6G5258 Salvia bowleyana HOM05D006711 ORTHO05D008104 5.3e-27 124.0 75 81.3
Cc07_g02450 Coffea canephora HOM05D006711 ORTHO05D008104 2.0e-26 122.1 75 82.7
GSVIVG01032507001 Vitis vinifera HOM05D006711 ORTHO05D008104 2.6e-26 121.7 75 77.3
ATR1149G012 Amborella trichopoda HOM05D006711 ORTHO05D008104 3.5e-26 121.3 67 89.6
vmacro05808 Vaccinium macrocarpon HOM05D006711 ORTHO05D008104 4.5e-26 120.9 75 80.0
HanXRQChr09g0265981 Helianthus annuus HOM05D006711 ORTHO05D008104 1.0e-25 119.8 72 81.9
HPP92_010905 Vanilla planifolia HOM05D006711 ORTHO05D008104 1.0e-25 119.8 75 77.3
HPP92_010907 Vanilla planifolia HOM05D006711 ORTHO05D008104 1.0e-25 119.8 75 77.3
Nitab4.5_0002792g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 1.3e-25 119.4 83 71.1
Lsat_1_v5_gn_4_181601 Lactuca sativa HOM05D006711 ORTHO05D008104 2.9e-25 118.2 72 81.9
Sed0016611 Sechium edule HOM05D006711 ORTHO05D008104 3.8e-25 117.9 80 73.8
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 5.0e-25 117.5 71 80.3
Actinidia33966 Actinidia chinensis HOM05D006711 ORTHO05D008104 6.5e-25 117.1 75 76.0
Haze_07479 Corylus avellana HOM05D006711 ORTHO05D008104 8.5e-25 116.7 58 98.3
CDE10G0426 Ceratophyllum demersum HOM05D006711 ORTHO05D008104 1.1e-24 116.3 71 78.9
Nitab4.5_0004762g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 1.5e-24 115.9 75 73.3
AUR62008246 Chenopodium quinoa HOM05D001451 ORTHO05D008104 2.5e-24 115.2 68 82.4
Peaxi162Scf00429g00118 Petunia axillaris HOM05D006711 ORTHO05D008104 3.2e-24 114.8 77 71.4
GSVIVG01007800001 Vitis vinifera HOM05D006711 ORTHO05D008104 4.2e-24 114.4 68 80.9
Sopen11g029530 Solanum pennellii HOM05D006711 ORTHO05D008104 7.2e-24 113.6 77 71.4
CAN.G742.33 Capsicum annuum HOM05D006711 ORTHO05D008104 9.4e-24 113.2 77 70.1
Oeu006591.3 Olea europaea HOM05D006711 ORTHO05D008104 1.2e-23 112.8 98 63.3
CiPaw.11G029900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.6e-23 112.5 67 82.1
Os09g0375900 Oryza sativa ssp. japonica HOM05D006711 ORTHO05D008104 2.3e-22 108.6 68 80.9
HanXRQChr12g0385511 Helianthus annuus HOM05D006711 ORTHO05D008104 4.0e-22 107.8 68 77.9
Zm00001eb311470 Zea mays HOM05D006711 ORTHO05D008104 4.0e-22 107.8 61 85.2
Lalb_Chr12g0201501 Lupinus albus HOM05D006711 ORTHO05D008104 8.8e-22 106.7 67 77.6
unitig_46.g17997 Utricularia gibba HOM05D006711 ORTHO05D008104 1.5e-21 105.9 94 62.8
Carub.0005s1414 Capsella rubella HOM05D000086 ORTHO05D008104 7.5e-21 103.6 68 73.5
QL10p013547 Quercus lobata HOM05D006711 ORTHO05D008104 9.7e-21 103.2 149 41.6
RcHm_v2.0_Chr7g0194021 Rosa chinensis HOM05D006711 ORTHO05D008104 1.3e-20 102.8 55 90.9
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 1.4e-19 99.4 61 78.7
Eucgr.J02179 Eucalyptus grandis HOM05D006711 ORTHO05D008104 1.8e-19 99.0 66 69.7
SEGI_30617 Sequoiadendron giganteum HOM05D006711 ORTHO05D008104 2.4e-19 98.6 71 67.6
PGSC0003DMG400003004 Solanum tuberosum HOM05D006711 ORTHO05D008104 5.9e-18 94.0 122 45.9
Nn4g22854 Nelumbo nucifera HOM05D006711 ORTHO05D008104 1.0e-17 93.2 60 75.0
Rhsim08G0056600 Rhododendron simsii HOM05D000086 ORTHO05D000983 2.2e-17 92.0 78 62.8
Rhsim10G0024900 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.5e-16 89.4 54 87.0
Rhsim10G0024700 Rhododendron simsii HOM05D006711 ORTHO05D008104 2.5e-16 88.6 51 88.2
CSS0024346 Camellia sinensis var. sinensis HOM05D006711 ORTHO05D008104 3.2e-16 88.2 51 86.3
CBR_g49624 Chara braunii HOM05D006711 ORTHO05D008104 5.5e-16 87.4 65 64.6
ATR0820G148 Amborella trichopoda HOM05D006711 ORTHO05D008104 2.1e-15 85.5 59 74.6
ATR0661G003 Amborella trichopoda HOM05D006711 ORTHO05D008104 3.6e-15 84.7 59 74.6
Pp3c14_16830 Physcomitrium patens HOM05D006711 ORTHO05D008104 4.7e-15 84.3 74 58.1
Mapoly0124s0028 Marchantia polymorpha HOM05D006711 ORTHO05D008104 1.4e-14 82.8 67 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1224 Anthoceros agrestis HOM05D006711 ORTHO05D008104 1.3e-12 76.3 62 64.5
Pp3c3_16770 Physcomitrium patens HOM05D006711 ORTHO05D008104 1.3e-12 76.3 62 66.1
PRCOL_00004863 Prasinoderma coloniale HOM05D006711 ORTHO05D008104 1.3e-12 76.3 73 52.1
Dinv35040 Davidia involucrata HOM05D006711 ORTHO05D008104 4.5e-10 67.8 39 89.7
HPP92_016979 Vanilla planifolia HOM05D006711 ORTHO05D008104 5.0e-09 64.3 34 94.1
Nn3g16941 Nelumbo nucifera HOM05D006711 ORTHO05D008104 2.7e-07 58.5 47 61.7
SHI34267 Sapria himalayana HOM05D006711 ORTHO05D008104 6.1e-07 57.4 34 85.3


User provided reference genes

Program Settings