Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 3.9e-51 204.5 104 100.0
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 4.8e-41 171.0 102 81.4
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 3.8e-38 161.4 100 76.0
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 4.9e-38 161.0 96 81.2
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 3.2e-37 158.3 98 76.5
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 9.3e-37 156.8 94 77.7
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 1.2e-36 156.4 111 73.0
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 1.2e-36 156.4 103 78.6
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.1e-36 155.6 104 72.1
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.7e-36 155.2 105 71.4
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.0e-35 153.3 96 77.1
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 8.7e-35 150.2 96 77.1
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.1e-34 149.8 96 75.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.1e-34 149.8 96 75.0
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 7.4e-34 147.1 98 74.5
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.6e-33 146.0 99 72.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.1e-33 145.6 102 66.7
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.7e-33 144.8 96 72.9
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.8e-33 144.4 104 69.2
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 8.1e-33 143.7 106 72.6
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.1e-32 143.3 78 94.9
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.1e-32 143.3 104 71.2
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.8e-32 142.5 96 72.9
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.8e-32 142.5 104 71.2
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 2.4e-32 142.1 102 67.6
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 4.0e-32 141.4 94 73.4
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 6.9e-32 140.6 95 71.6
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 6.9e-32 140.6 106 69.8
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.2e-31 139.8 98 74.5
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.5e-31 139.4 104 70.2
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.5e-31 139.4 105 67.6
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 2.6e-31 138.7 104 68.3
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 7.6e-31 137.1 97 71.1
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 7.6e-31 137.1 100 71.0
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.3e-30 136.3 95 66.3
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 2.2e-30 135.6 95 72.6
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 2.9e-30 135.2 102 64.7
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 2.9e-30 135.2 95 68.4
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 2.9e-30 135.2 101 68.3
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.9e-30 135.2 89 69.7
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.8e-30 134.8 98 65.3
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 4.9e-30 134.4 102 63.7
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 6.5e-30 134.0 100 69.0
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 8.4e-30 133.7 99 68.7
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.5e-29 132.1 102 64.7
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 2.5e-29 132.1 96 68.8
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 3.2e-29 131.7 104 70.2
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 3.2e-29 131.7 104 70.2
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 4.2e-29 131.3 96 67.7
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 5.5e-29 131.0 104 64.4
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 5.5e-29 131.0 104 70.2
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 5.5e-29 131.0 95 68.4
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 7.1e-29 130.6 95 69.5
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.6e-28 129.4 102 62.7
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.6e-28 129.4 95 67.4
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 2.1e-28 129.0 100 63.0
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 2.1e-28 129.0 95 66.3
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 2.7e-28 128.6 94 68.1
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 3.5e-28 128.3 104 67.3
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 3.5e-28 128.3 95 68.4
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 3.5e-28 128.3 98 66.3
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 3.5e-28 128.3 98 66.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 4.6e-28 127.9 95 65.3
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 4.6e-28 127.9 97 71.1
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 6.0e-28 127.5 97 67.0
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 6.0e-28 127.5 102 68.6
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 6.0e-28 127.5 97 63.9
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 7.9e-28 127.1 104 62.5
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 7.9e-28 127.1 99 66.7
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 7.9e-28 127.1 97 69.1
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 7.9e-28 127.1 95 65.3
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.3e-27 126.3 104 67.3
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.3e-27 126.3 105 65.7
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 2.3e-27 125.6 99 65.7
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 2.3e-27 125.6 97 69.1
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 2.3e-27 125.6 100 68.0
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 3.0e-27 125.2 102 61.8
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 5.1e-27 124.4 104 63.5
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 5.1e-27 124.4 98 65.3
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 5.1e-27 124.4 98 65.3
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 5.1e-27 124.4 98 65.3
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 8.7e-27 123.6 94 60.6
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.1e-26 123.2 98 64.3
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.5e-26 122.9 103 62.1
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.5e-26 122.1 95 65.3
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 3.3e-26 121.7 96 67.7
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 5.7e-26 120.9 94 59.6
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 9.6e-26 120.2 95 63.2
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 9.6e-26 120.2 95 63.2
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 2.1e-25 119.0 98 60.2
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.2e-25 117.1 98 62.2
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.1e-24 116.7 102 60.8
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.4e-24 115.5 99 58.6
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 3.1e-24 115.2 93 63.4
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 5.3e-24 114.4 91 60.4
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 6.9e-24 114.0 97 60.8
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.0e-23 112.5 77 70.1
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.0e-23 112.5 77 70.1
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 5.8e-23 110.9 141 50.4
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 2.9e-22 108.6 91 57.1
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 2.9e-22 108.6 91 57.1
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 2.9e-22 108.6 91 57.1
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 5.0e-22 107.8 99 56.6
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 6.5e-22 107.5 74 67.6
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 1.4e-21 106.3 93 57.0
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.4e-21 106.3 101 52.5
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 3.2e-21 105.1 93 59.1
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 3.2e-21 105.1 105 58.1
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 5.5e-21 104.4 93 57.0
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 5.5e-21 104.4 93 57.0
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 7.2e-21 104.0 93 57.0
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 7.2e-21 104.0 93 57.0
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 2.1e-20 102.4 93 55.9
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 4.6e-20 101.3 88 53.4
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 4.6e-20 101.3 92 59.8
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 4.6e-20 101.3 89 58.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 4.6e-20 101.3 93 57.0
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 1.8e-19 99.4 108 52.8
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 3.0e-19 98.6 108 52.8
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 5.1e-19 97.8 76 69.7
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 6.7e-19 97.4 98 57.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 2.5e-18 95.5 77 61.0
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 1.6e-17 92.8 76 60.5
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.8e-17 92.0 90 51.1
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 1.1e-16 90.1 96 50.0
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.1e-16 90.1 76 60.5
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.8e-16 89.4 86 53.5
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 5.3e-16 87.8 67 64.2
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 7.7e-15 84.0 87 51.7
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 8.5e-14 80.5 66 65.2
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-13 80.1 91 48.4
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.9e-13 79.3 87 50.6
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 9.4e-13 77.0 91 46.2
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 4.6e-12 74.7 53 67.9
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 3.0e-11 72.0 51 66.7
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 8.8e-11 70.5 89 44.9
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 3.3e-10 68.6 67 56.7
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 9.7e-10 67.0 72 52.8
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 3.7e-09 65.1 61 59.0
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 3.7e-09 65.1 57 56.1
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 4.8e-09 64.7 65 55.4
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.1e-08 63.5 58 53.4
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 3.1e-08 62.0 42 66.7
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 4.1e-08 61.6 58 53.4
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.0e-07 59.3 34 82.4
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 7.7e-07 57.4 37 73.0
MBI15_g16478_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 1.0e-06 57.0 36 77.8
MBI05_g13276_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.3e-06 56.6 34 79.4
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 6.5e-06 54.3 34 79.4


User provided reference genes

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