Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019055 Carpinus fangiana HOM05D017882 ORTHO05D020350 7.5e-52 206.8 100 100.0
Cfa004391 Carpinus fangiana HOM05D017882 ORTHO05D020350 3.2e-42 174.9 100 86.0
Cfa015099 Carpinus fangiana HOM05D000188 ORTHO05D000362 2.4e-37 158.7 91 85.7
Cfa002696 Carpinus fangiana HOM05D017882 ORTHO05D020350 7.6e-36 153.7 91 84.6
Cfa006821 Carpinus fangiana HOM05D017882 ORTHO05D020350 2.9e-19 98.6 50 90.0
Cfa007710 Carpinus fangiana HOM05D001522 ORTHO05D001547 6.4e-19 97.4 47 97.9
Cfa023324 Carpinus fangiana HOM05D017882 ORTHO05D020350 1.1e-18 96.7 50 86.0
Cfa014271 Carpinus fangiana HOM05D017882 ORTHO05D020350 1.9e-18 95.9 50 86.0
Cfa011746 Carpinus fangiana HOM05D000088 ORTHO05D006380 4.6e-17 91.3 46 93.5
Haze_24387 Corylus avellana HOM05D000088 ORTHO05D006380 4.6e-17 91.3 46 93.5
PSO801G0216 Papaver somniferum HOM05D000088 ORTHO05D006380 1.3e-14 83.2 54 61.1
Potri.001G280700 Populus trichocarpa HOM05D000088 ORTHO05D006380 1.3e-14 83.2 63 63.5
PSO339G6467 Papaver somniferum HOM05D000088 ORTHO05D006380 1.6e-14 82.8 54 61.1
Atru.chr3.4153 Acer truncatum HOM05D000088 ORTHO05D006380 2.1e-14 82.4 45 82.2
Potri.009G075900 Populus trichocarpa HOM05D000088 ORTHO05D006380 2.1e-14 82.4 51 74.5
Prupe.6G051800 Prunus persica HOM05D000088 ORTHO05D006380 2.1e-14 82.4 56 67.9
CSS0004336 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D006380 2.8e-14 82.0 48 79.2
CSS0043996 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D006380 2.8e-14 82.0 48 79.2
MD03G1062000 Malus domestica HOM05D000088 ORTHO05D006380 2.8e-14 82.0 59 67.8
MD11G1065600 Malus domestica HOM05D000088 ORTHO05D006380 2.8e-14 82.0 59 67.8
PGR119G0811 Punica granatum HOM05D000088 ORTHO05D006380 2.8e-14 82.0 48 77.1
Sabra09G0057800 Salix brachista HOM05D000088 ORTHO05D006380 2.8e-14 82.0 51 74.5
QL01p039724 Quercus lobata HOM05D000088 ORTHO05D006380 3.7e-14 81.6 43 86.0
TWI36G1610 Tripterygium wilfordii HOM05D000088 ORTHO05D006380 3.7e-14 81.6 47 74.5
CiPaw.13G072600 Carya illinoinensis HOM05D000088 ORTHO05D006380 6.2e-14 80.9 40 92.5
RcHm_v2.0_Chr5g0070921 Rosa chinensis HOM05D000088 ORTHO05D006380 6.2e-14 80.9 43 83.7
vmacro02936 Vaccinium macrocarpon HOM05D000088 ORTHO05D006380 6.2e-14 80.9 50 76.0
Gohir.A07G171900 Gossypium hirsutum HOM05D000088 ORTHO05D006380 8.1e-14 80.5 54 70.4
Gohir.D07G178600 Gossypium hirsutum HOM05D000088 ORTHO05D006380 8.1e-14 80.5 54 70.4
Gorai.001G199800 Gossypium raimondii HOM05D000088 ORTHO05D006380 8.1e-14 80.5 54 70.4
GSVIVG01024679001 Vitis vinifera HOM05D000088 ORTHO05D006380 8.1e-14 80.5 48 75.0
CDE12G0743 Ceratophyllum demersum HOM05D000088 ORTHO05D006380 1.1e-13 80.1 46 71.7
Ciclev10028051m.g Citrus clementina HOM05D000088 ORTHO05D006380 1.1e-13 80.1 43 81.4
Manes.18G144500 Manihot esculenta HOM05D000088 ORTHO05D006380 1.4e-13 79.7 47 76.6
Rhsim13G0066000 Rhododendron simsii HOM05D000088 ORTHO05D006380 1.4e-13 79.7 48 75.0
Sabra16G0174400 Salix brachista HOM05D000088 ORTHO05D006380 1.4e-13 79.7 63 61.9
MELO3C026840.2 Cucumis melo HOM05D000088 ORTHO05D006380 1.8e-13 79.3 46 73.9
Lj1A128T44 Lonicera japonica HOM05D000088 ORTHO05D006380 1.8e-13 79.3 51 74.5
Thecc.01G003500 Theobroma cacao HOM05D000088 ORTHO05D006380 1.8e-13 79.3 43 81.4
Lsat_1_v5_gn_8_111061 Lactuca sativa HOM05D000088 ORTHO05D006380 2.4e-13 79.0 42 85.7
Manes.02G213600 Manihot esculenta HOM05D000088 ORTHO05D006380 2.4e-13 79.0 47 76.6
CDE06G1759 Ceratophyllum demersum HOM05D000088 ORTHO05D006380 3.1e-13 78.6 43 76.7
ClCG02G019340 Citrullus lanatus HOM05D000088 ORTHO05D006380 3.1e-13 78.6 44 77.3
Duzib147G0696 Durio zibethinus HOM05D000088 ORTHO05D006380 3.1e-13 78.6 50 70.0
Sed0001583 Sechium edule HOM05D000088 ORTHO05D006380 3.1e-13 78.6 45 75.6
CsaV3_6G015960 Cucumis sativus L. HOM05D000088 ORTHO05D006380 4.0e-13 78.2 46 71.7
FAN21G3629 Fragaria x ananassa HOM05D000088 ORTHO05D006380 4.0e-13 78.2 43 81.4
FAN25G0512 Fragaria x ananassa HOM05D000088 ORTHO05D006380 4.0e-13 78.2 43 81.4
arahy.Tifrunner.gnm1.ann1.HC1U3C Arachis hypogaea HOM05D000088 ORTHO05D006380 5.3e-13 77.8 43 79.1
arahy.Tifrunner.gnm1.ann1.K6VENA Arachis hypogaea HOM05D000088 ORTHO05D006380 5.3e-13 77.8 43 79.1
Cpa.g.sc2.387 Carica papaya HOM05D000088 ORTHO05D006380 5.3e-13 77.8 43 79.1
FAN11G0766 Fragaria x ananassa HOM05D000088 ORTHO05D006380 5.3e-13 77.8 43 81.4
Glyma.02G229900 Glycine max HOM05D000088 ORTHO05D006380 5.3e-13 77.8 42 81.0
Glyma.14G196600 Glycine max HOM05D000088 ORTHO05D006380 5.3e-13 77.8 42 81.0
Nitab4.5_0002043g0020 Nicotiana tabacum HOM05D000088 ORTHO05D006380 5.3e-13 77.8 50 70.0
Phvul.008G258400 Phaseolus vulgaris HOM05D000088 ORTHO05D006380 5.3e-13 77.8 42 81.0
VMungo0647G1890 Vigna mungo HOM05D000088 ORTHO05D006380 5.3e-13 77.8 42 81.0
Actinidia32622 Actinidia chinensis HOM05D000088 ORTHO05D006380 6.9e-13 77.4 48 75.0
Ah.08g215290 Amaranthus hybridus HOM05D000088 ORTHO05D006380 6.9e-13 77.4 48 70.8
FAN16G3274 Fragaria x ananassa HOM05D000088 ORTHO05D006380 6.9e-13 77.4 42 83.3
Solyc06g082190.3 Solanum lycopersicum HOM05D000088 ORTHO05D006380 6.9e-13 77.4 49 71.4
Sopen06g033570 Solanum pennellii HOM05D000088 ORTHO05D006380 6.9e-13 77.4 49 71.4
PGSC0003DMG400030450 Solanum tuberosum HOM05D000088 ORTHO05D006380 6.9e-13 77.4 49 71.4
TAR633G2705 Trochodendron aralioides HOM05D000088 ORTHO05D006380 6.9e-13 77.4 48 70.8
ATR0174G020 Amborella trichopoda HOM05D000088 ORTHO05D006380 9.0e-13 77.0 53 62.3
Aqoxy2G00821 Aquilegia oxysepala HOM05D000088 ORTHO05D006380 9.0e-13 77.0 43 79.1
ECA236G4487 Erigeron canadensis HOM05D000088 ORTHO05D006380 9.0e-13 77.0 40 87.5
CAN.G1095.16 Capsicum annuum HOM05D000088 ORTHO05D006380 1.2e-12 76.6 44 77.3
Nitab4.5_0001115g0070 Nicotiana tabacum HOM05D000088 ORTHO05D006380 1.2e-12 76.6 48 72.9
Lalb_Chr17g0345281 Lupinus albus HOM05D000088 ORTHO05D006380 1.5e-12 76.3 44 72.7
PSO017G7188 Papaver somniferum HOM05D000088 ORTHO05D006380 1.5e-12 76.3 42 76.2
PSO170G5275 Papaver somniferum HOM05D000088 ORTHO05D006380 1.5e-12 76.3 42 76.2
Hund05038 Selenicereus undatus HOM05D000088 ORTHO05D006380 1.5e-12 76.3 48 68.8
MSTRG.17885 Avicennia marina HOM05D000088 ORTHO05D006380 2.0e-12 75.9 48 70.8
Eucgr.J01907 Eucalyptus grandis HOM05D001929 ORTHO05D002426 2.6e-12 75.5 40 82.5
Lalb_Chr04g0252091 Lupinus albus HOM05D000088 ORTHO05D006380 2.6e-12 75.5 44 68.2
FvH4_3g39380 Fragaria vesca HOM05D000088 ORTHO05D006380 3.4e-12 75.1 40 85.0
Oeu049284.1 Olea europaea HOM05D000088 ORTHO05D006380 3.4e-12 75.1 48 68.8
EL10Ac7g15891 Beta vulgaris HOM05D000088 ORTHO05D006380 4.5e-12 74.7 40 80.0
AUR62036250 Chenopodium quinoa HOM05D000088 ORTHO05D006380 5.8e-12 74.3 40 80.0
DCAR_007353 Daucus carota HOM05D001929 ORTHO05D002426 5.8e-12 74.3 48 70.8
Hma1.2p1_0841F.1_g226840 Hydrangea macrophylla HOM05D000088 ORTHO05D006380 5.8e-12 74.3 46 73.9
Sc12g0000250 Simmondsia chinensis HOM05D000088 ORTHO05D006380 7.6e-12 73.9 48 66.7
SGA_v2.0_scaffold80G25722 Striga asiatica HOM05D000088 ORTHO05D006380 7.6e-12 73.9 40 82.5
HanXRQChr10g0312151 Helianthus annuus HOM05D000088 ORTHO05D006380 1.0e-11 73.6 40 82.5
Lalb_Chr18g0051271 Lupinus albus HOM05D000088 ORTHO05D006380 1.3e-11 73.2 47 66.0
TAR636G0713 Trochodendron aralioides HOM05D000088 ORTHO05D006380 1.3e-11 73.2 48 66.7
Migut.N00772 Erythranthe guttata HOM05D000088 ORTHO05D006380 2.2e-11 72.4 54 63.0
Peaxi162Scf00540g00014 Petunia axillaris HOM05D000088 ORTHO05D006380 2.2e-11 72.4 44 68.2
Psat5g155640 Pisum sativum HOM05D000088 ORTHO05D006380 2.2e-11 72.4 41 75.6
Sp6g20210 Schrenkiella parvula HOM05D000088 ORTHO05D006380 2.2e-11 72.4 57 56.1
THA.LOC104810695 Tarenaya hassleriana HOM05D000088 ORTHO05D006380 2.2e-11 72.4 40 77.5
Lj6g0013953 Lotus japonicus HOM05D000088 ORTHO05D006380 2.9e-11 72.0 38 81.6
Medtr3g465590 Medicago truncatula HOM05D000088 ORTHO05D006380 2.9e-11 72.0 40 77.5
SEGI_07216 Sequoiadendron giganteum HOM05D000088 ORTHO05D006380 2.9e-11 72.0 40 72.5
SEGI_26789 Sequoiadendron giganteum HOM05D000088 ORTHO05D006380 2.9e-11 72.0 40 72.5
Cfa020392 Carpinus fangiana HOM05D017882 ORTHO05D020350 4.9e-11 71.2 55 67.3
TPR.G32888 Trifolium pratense HOM05D000088 ORTHO05D006380 4.9e-11 71.2 39 79.5
Ca_14989_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 1.1e-10 70.1 39 76.9
Ca_30102_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 1.1e-10 70.1 39 76.9
Aa31LG11G300 Aethionema arabicum HOM05D000761 ORTHO05D006380 1.4e-10 69.7 69 52.2
Cc02_g20710 Coffea canephora HOM05D000088 ORTHO05D006380 1.9e-10 69.3 40 77.5
Sp6g35760 Schrenkiella parvula HOM05D000088 ORTHO05D006380 1.9e-10 69.3 40 70.0
AT5G07140 Arabidopsis thaliana HOM05D000088 ORTHO05D006380 2.5e-10 68.9 40 70.0
Carub.0006s0606 Capsella rubella HOM05D000088 ORTHO05D006380 2.5e-10 68.9 40 70.0
BcaB01g04518 Brassica carinata HOM05D000088 ORTHO05D006380 3.2e-10 68.6 51 54.9
Carub.0008s1911 Capsella rubella HOM05D000088 ORTHO05D006380 3.2e-10 68.6 48 60.4
Cc01_g14660 Coffea canephora HOM05D000088 ORTHO05D006380 3.2e-10 68.6 43 65.1
A10p28920 Brassica napus HOM05D000761 ORTHO05D006380 4.2e-10 68.2 40 70.0
C09p69270 Brassica napus HOM05D000761 ORTHO05D006380 4.2e-10 68.2 40 70.0
BolC9t59671H Brassica oleracea HOM05D000761 ORTHO05D006380 4.2e-10 68.2 40 70.0
BraA10t44939Z Brassica rapa HOM05D000761 ORTHO05D006380 4.2e-10 68.2 40 70.0
AL8G34760 Arabidopsis lyrata HOM05D000088 ORTHO05D006380 7.1e-10 67.4 40 67.5
CARHR272350 Cardamine hirsuta HOM05D000088 ORTHO05D006380 7.1e-10 67.4 40 67.5
Glyma.18G058800 Glycine max HOM05D000088 ORTHO05D006380 7.1e-10 67.4 40 72.5
AL6G17330 Arabidopsis lyrata HOM05D000088 ORTHO05D006380 9.3e-10 67.0 40 67.5
AT5G58520 Arabidopsis thaliana HOM05D000088 ORTHO05D006380 1.6e-09 66.2 40 65.0
A03p12190 Brassica napus HOM05D000088 ORTHO05D006380 1.6e-09 66.2 40 65.0
C03p14260 Brassica napus HOM05D000088 ORTHO05D006380 1.6e-09 66.2 40 65.0
BolC3t13873H Brassica oleracea HOM05D000088 ORTHO05D006380 1.6e-09 66.2 40 65.0
BraA03t10530Z Brassica rapa HOM05D000088 ORTHO05D006380 1.6e-09 66.2 40 65.0
Thhalv10013017m.g Eutrema salsugineum HOM05D000088 ORTHO05D006380 1.6e-09 66.2 40 65.0
CARHR206000 Cardamine hirsuta HOM05D000088 ORTHO05D006380 2.1e-09 65.9 40 67.5
Ca_05636_v3 Cicer arietinum L. HOM05D000088 ORTHO05D006380 2.7e-09 65.5 42 61.9
Phvul.006G072300 Phaseolus vulgaris HOM05D000088 ORTHO05D006380 3.5e-09 65.1 40 70.0
Medtr5g072500 Medicago truncatula HOM05D000088 ORTHO05D006380 4.6e-09 64.7 42 61.9
MD15G1018800 Malus domestica HOM05D000088 ORTHO05D006380 6.0e-09 64.3 42 76.2
Nitab4.5_0006308g0020 Nicotiana tabacum HOM05D000088 ORTHO05D006380 6.0e-09 64.3 38 76.3
Psat2g055320 Pisum sativum HOM05D000088 ORTHO05D006380 6.0e-09 64.3 42 61.9
TPR.G34746 Trifolium pratense HOM05D000088 ORTHO05D006380 7.9e-09 63.9 42 61.9
Glyma.11G166000 Glycine max HOM05D000088 ORTHO05D006380 1.3e-08 63.2 40 67.5
HPP92_025108 Vanilla planifolia HOM05D000088 ORTHO05D006380 2.3e-08 62.4 36 72.2
LjContig00141g0016544 Lotus japonicus HOM05D000088 ORTHO05D006380 3.9e-08 61.6 42 59.5
SMO118G0147 Selaginella moellendorffii HOM05D000088 ORTHO05D006380 2.8e-06 55.5 73 37.0


User provided reference genes

Program Settings