Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 1.8e-193 679.1 351 100.0
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 3.4e-176 621.7 357 91.6
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 9.2e-129 464.2 360 72.2
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 6.6e-111 404.8 368 64.7
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 4.9e-106 388.7 291 75.6
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.8e-104 381.3 360 62.8
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 7.8e-104 381.3 357 62.5
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 3.3e-102 375.9 373 60.6
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 3.3e-102 375.9 365 62.2
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 5.6e-102 375.2 359 62.1
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 9.6e-102 374.4 379 59.6
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 2.1e-101 373.2 371 61.7
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 6.2e-101 371.7 357 59.9
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.4e-100 370.5 365 59.5
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 5.3e-100 368.6 357 59.9
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 6.9e-100 368.2 366 59.3
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 4.4e-99 365.5 357 59.4
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.6e-99 364.8 360 61.1
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 1.3e-98 364.0 366 57.9
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.2e-97 359.4 360 60.3
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 5.4e-97 358.6 362 59.9
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 7.1e-97 358.2 377 60.2
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 5.1e-95 352.1 370 57.3
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 8.7e-95 351.3 368 60.1
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 5.6e-94 348.6 378 57.9
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 1.8e-92 343.6 370 55.1
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 9.0e-92 341.3 385 53.5
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 1.2e-91 340.9 385 55.6
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 7.6e-91 338.2 377 56.0
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 2.9e-90 336.3 353 55.5
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 3.8e-90 335.9 386 53.9
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 4.3e-86 322.4 359 54.0
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 4.3e-86 322.4 366 54.4
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 5.6e-86 322.0 360 55.6
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 7.4e-86 321.6 373 55.5
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 3.7e-85 319.3 354 54.2
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 4.0e-84 315.8 358 56.1
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 3.4e-83 312.8 370 55.4
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 7.6e-83 311.6 428 47.9
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 7.6e-83 311.6 364 54.4
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.0e-82 311.2 361 55.7
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 4.9e-82 308.9 375 52.3
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.4e-81 307.4 368 53.0
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 7.1e-81 305.1 354 54.8
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 9.3e-81 304.7 353 55.0
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 2.1e-80 303.5 370 53.0
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 3.5e-80 302.8 369 53.9
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-80 302.8 400 49.5
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 1.1e-78 297.7 363 53.4
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.3e-78 295.8 355 52.4
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.1e-76 291.2 363 52.1
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 4.5e-75 285.8 364 51.6
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 5.0e-74 282.3 295 59.3
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.9e-73 280.4 359 52.6
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 1.6e-72 277.3 352 50.6
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 2.7e-72 276.6 458 41.9
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 3.0e-71 273.1 306 57.2
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 1.1e-70 271.2 354 49.2
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.9e-70 270.4 373 48.0
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 7.4e-70 268.5 352 50.0
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 1.3e-69 267.7 295 56.9
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 4.1e-68 262.7 357 48.5
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 9.0e-68 261.5 348 49.4
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 2.9e-66 256.5 383 46.7
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 6.5e-66 255.4 348 48.3
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 1.1e-65 254.6 348 48.0
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 6.3e-61 238.8 380 45.0
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 5.3e-60 235.7 393 43.3
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 1.5e-59 234.2 425 42.8
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 2.0e-59 233.8 359 47.4
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 2.7e-56 223.4 370 45.9
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 7.9e-56 221.9 374 43.6
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 6.7e-55 218.8 378 44.4
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 5.7e-54 215.7 372 43.8
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 2.8e-53 213.4 374 44.4
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 1.8e-52 210.7 282 50.4
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 9.1e-52 208.4 349 44.1
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 4.5e-51 206.1 403 40.0
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.7e-50 204.1 373 42.4
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 1.7e-50 204.1 373 42.4
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 2.9e-50 203.4 406 39.2
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 6.5e-50 202.2 371 41.8
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 6.5e-50 202.2 371 41.8
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 8.5e-50 201.8 335 42.1
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 2.5e-49 200.3 369 41.5
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 1.2e-48 198.0 300 47.7
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.6e-48 197.6 375 40.5
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.1e-48 197.2 354 39.8
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 2.7e-48 196.8 366 43.4
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 7.4e-46 188.7 367 40.9
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 5.9e-43 179.1 182 60.4
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 2.5e-41 173.7 307 44.6
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 5.2e-39 166.0 369 39.8
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 2.4e-36 157.1 301 41.5
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 2.0e-35 154.1 392 37.8
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 2.2e-34 150.6 359 36.8
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 2.2e-34 150.6 354 36.7
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 5.0e-34 149.4 362 36.2
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 5.0e-34 149.4 354 36.7
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 4.7e-32 142.9 365 36.4
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 1.4e-31 141.4 287 37.3
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 9.8e-30 135.2 340 37.1
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 1.3e-29 134.8 353 34.6
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 2.8e-29 133.7 375 33.9
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.3e-18 97.4 69 71.0
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.9e-18 97.1 79 65.8
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 6.6e-18 95.9 108 48.1
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.6e-18 95.9 76 64.5
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.6e-18 95.5 61 78.7
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.5e-17 94.0 69 69.6
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.5e-17 94.0 69 69.6
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.3e-17 93.2 69 68.1
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-16 91.3 69 69.6
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 4.0e-15 86.7 64 65.6
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 6.8e-15 85.9 125 48.0
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-14 84.7 52 78.8
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 4.4e-14 83.2 47 83.0
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 2.4e-12 77.4 55 67.3
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 5.4e-12 76.3 201 32.3
MSTRG.11411 Avicennia marina HOM05D006327 ORTHO05D007952 8.6e-10 68.9 94 39.4
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.9e-09 67.8 132 38.6
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 5.6e-09 66.2 203 29.1
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 1.8e-07 61.2 64 53.1
BcaNung06177 Brassica carinata HOM05D006327 ORTHO05D007952 4.4e-06 56.6 65 53.8


User provided reference genes

Program Settings