Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019003 Carpinus fangiana HOM05D002966 ORTHO05D003274 8.9e-64 246.9 136 100.0
Cfa010899 Carpinus fangiana HOM05D002966 ORTHO05D003274 1.9e-61 239.2 136 96.3
Cfa020466 Carpinus fangiana HOM05D002966 ORTHO05D003274 1.5e-39 166.4 105 83.8
Haze_20101 Corylus avellana HOM05D002966 ORTHO05D003274 9.0e-32 140.6 77 94.8
Haze_20100 Corylus avellana HOM05D002966 ORTHO05D003274 2.6e-31 139.0 77 93.5
Duzib213G0090 Durio zibethinus HOM05D002966 ORTHO05D003274 1.7e-30 136.3 77 89.6
Thecc.07G160900 Theobroma cacao HOM05D002966 ORTHO05D003274 2.9e-30 135.6 77 87.0
Actinidia14217 Actinidia chinensis HOM05D002966 ORTHO05D003274 3.8e-30 135.2 77 88.3
Gohir.A01G096300 Gossypium hirsutum HOM05D002966 ORTHO05D003274 4.9e-30 134.8 77 88.3
Gohir.D01G080600 Gossypium hirsutum HOM05D002966 ORTHO05D003274 4.9e-30 134.8 77 88.3
Gorai.002G105300 Gossypium raimondii HOM05D002966 ORTHO05D003274 4.9e-30 134.8 77 88.3
vmacro11714 Vaccinium macrocarpon HOM05D002966 ORTHO05D003274 1.4e-29 133.3 77 87.0
CiPaw.11G063400 Carya illinoinensis HOM05D002966 ORTHO05D003274 1.9e-29 132.9 77 87.0
Ciclev10005912m.g Citrus clementina HOM05D002966 ORTHO05D003274 1.9e-29 132.9 77 85.7
Lj1P909T68 Lonicera japonica HOM05D002966 ORTHO05D003274 1.9e-29 132.9 77 87.0
Rhsim06G0240500 Rhododendron simsii HOM05D002966 ORTHO05D003274 2.5e-29 132.5 77 85.7
CSS0037695 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 3.2e-29 132.1 77 87.0
CSS0042932 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 3.2e-29 132.1 77 87.0
COL.COLO4_38362 Corchorus olitorius HOM05D002966 ORTHO05D003274 3.2e-29 132.1 77 85.7
Manes.15G015100 Manihot esculenta HOM05D002966 ORTHO05D003274 4.2e-29 131.7 77 84.4
Hma1.2p1_0151F.1_g067530 Hydrangea macrophylla HOM05D002966 ORTHO05D003274 9.3e-29 130.6 77 84.4
Dinv19602 Davidia involucrata HOM05D002966 ORTHO05D003274 1.2e-28 130.2 73 89.0
HanXRQChr11g0335081 Helianthus annuus HOM05D002966 ORTHO05D003274 2.1e-28 129.4 77 83.1
EL10Ac2g03280 Beta vulgaris HOM05D002966 ORTHO05D003274 3.5e-28 128.6 77 81.8
Oeu002798.1 Olea europaea HOM05D002966 ORTHO05D003274 3.5e-28 128.6 77 83.1
Nn7g37912 Nelumbo nucifera HOM05D002966 ORTHO05D003274 4.6e-28 128.3 77 84.4
Sabra05G0079100 Salix brachista HOM05D002966 ORTHO05D003274 6.0e-28 127.9 77 83.1
Potri.005G096100 Populus trichocarpa HOM05D002966 ORTHO05D003274 7.9e-28 127.5 77 83.1
PGR031G3508 Punica granatum HOM05D002966 ORTHO05D003274 7.9e-28 127.5 77 80.5
Solyc07g066540.1 Solanum lycopersicum HOM05D002966 ORTHO05D003274 7.9e-28 127.5 77 81.8
Eucgr.F04302 Eucalyptus grandis HOM05D002966 ORTHO05D003274 1.0e-27 127.1 77 83.1
Eucgr.F04429 Eucalyptus grandis HOM05D002966 ORTHO05D003274 1.0e-27 127.1 77 83.1
QL04p077258 Quercus lobata HOM05D002966 ORTHO05D003274 1.0e-27 127.1 77 83.1
CANSAT80G1447 Cannabis sativa HOM05D002966 ORTHO05D003274 1.3e-27 126.7 77 84.4
Migut.H01679 Erythranthe guttata HOM05D002966 ORTHO05D003274 1.3e-27 126.7 77 81.8
Sopen07g034700 Solanum pennellii HOM05D002966 ORTHO05D003274 1.3e-27 126.7 77 81.8
PGSC0003DMG400022234 Solanum tuberosum HOM05D002966 ORTHO05D003274 1.3e-27 126.7 77 81.8
Actinidia07368 Actinidia chinensis HOM05D002966 ORTHO05D003274 1.8e-27 126.3 75 82.7
TWI38G0569 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 1.8e-27 126.3 77 81.8
Atru.BG.175.p Acer truncatum HOM05D002966 ORTHO05D003274 2.3e-27 125.9 73 86.3
Aqoxy1G01476 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 2.3e-27 125.9 75 82.7
Sp3g11010 Schrenkiella parvula HOM05D002966 ORTHO05D003274 3.0e-27 125.6 77 83.1
BcaC05g29231 Brassica carinata HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 81.8
C05p55060 Brassica napus HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 81.8
BolC5t34174H Brassica oleracea HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 81.8
FAN16G2402 Fragaria x ananassa HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 80.5
Nitab4.5_0002321g0020 Nicotiana tabacum HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 79.2
RcHm_v2.0_Chr5g0025961 Rosa chinensis HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 80.5
TWI39G0520 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 3.9e-27 125.2 77 80.5
Ah.16g106440 Amaranthus hybridus HOM05D002966 ORTHO05D003274 6.7e-27 124.4 77 76.6
Manes.17G045900 Manihot esculenta HOM05D002966 ORTHO05D003274 6.7e-27 124.4 77 79.2
FvH4_3g15460 Fragaria vesca HOM05D002966 ORTHO05D003274 8.7e-27 124.0 77 79.2
FAN21G2350 Fragaria x ananassa HOM05D002966 ORTHO05D003274 8.7e-27 124.0 77 79.2
AL3G24540 Arabidopsis lyrata HOM05D002966 ORTHO05D003274 1.1e-26 123.6 77 81.8
A05p36630 Brassica napus HOM05D002966 ORTHO05D003274 1.1e-26 123.6 77 80.5
BraA05t22467Z Brassica rapa HOM05D002966 ORTHO05D003274 1.1e-26 123.6 77 80.5
Carub.0003s1223 Capsella rubella HOM05D002966 ORTHO05D003274 1.1e-26 123.6 77 81.8
BcaB06g25505 Brassica carinata HOM05D002966 ORTHO05D003274 1.5e-26 123.2 77 80.5
THA.LOC104810266 Tarenaya hassleriana HOM05D002966 ORTHO05D003274 1.5e-26 123.2 77 79.2
AT3G12870 Arabidopsis thaliana HOM05D002966 ORTHO05D003274 2.5e-26 122.5 77 80.5
MSTRG.14551 Avicennia marina HOM05D002966 ORTHO05D003274 2.5e-26 122.5 77 79.2
CARHR087390 Cardamine hirsuta HOM05D002966 ORTHO05D003274 2.5e-26 122.5 77 80.5
CsaV3_7G022780 Cucumis sativus L. HOM05D002966 ORTHO05D003274 2.5e-26 122.5 77 79.2
A01p40690 Brassica napus HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 79.2
BolC1t05175H Brassica oleracea HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 80.5
BraA01t04103Z Brassica rapa HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 79.2
AUR62026777 Chenopodium quinoa HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 77.9
MELO3C012619.2 Cucumis melo HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 77.9
MD05G1223200 Malus domestica HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 79.2
MD10G1204600 Malus domestica HOM05D002966 ORTHO05D003274 3.3e-26 122.1 77 79.2
MBI02_g00520_MAGBIO Magnolia biondii HOM05D002966 ORTHO05D003274 4.3e-26 121.7 75 80.0
Prupe.4G137100 Prunus persica HOM05D002966 ORTHO05D003274 5.7e-26 121.3 77 80.5
ATR0763G105 Amborella trichopoda HOM05D002966 ORTHO05D003274 7.4e-26 120.9 77 76.6
ClCG09G022620 Citrullus lanatus HOM05D002966 ORTHO05D003274 7.4e-26 120.9 77 77.9
Cc00_g21090 Coffea canephora HOM05D002966 ORTHO05D003274 7.4e-26 120.9 78 78.2
BcaC09g48267 Brassica carinata HOM05D002966 ORTHO05D003274 9.7e-26 120.6 78 80.8
C01p52320 Brassica napus HOM05D002966 ORTHO05D003274 9.7e-26 120.6 78 80.8
Thhalv10021525m.g Eutrema salsugineum HOM05D002966 ORTHO05D003274 9.7e-26 120.6 78 80.8
Aqoxy6G02814 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 1.3e-25 120.2 77 76.6
Cpa.g.c29671.3 Carica papaya HOM05D002966 ORTHO05D003274 1.3e-25 120.2 77 76.6
DCAR_019925 Daucus carota HOM05D002966 ORTHO05D003274 1.6e-25 119.8 77 75.3
FAN11G0046 Fragaria x ananassa HOM05D002966 ORTHO05D003274 1.6e-25 119.8 77 77.9
PSO170G3509 Papaver somniferum HOM05D002966 ORTHO05D003274 1.6e-25 119.8 77 77.9
BcaB04g21042 Brassica carinata HOM05D002966 ORTHO05D003274 2.2e-25 119.4 78 79.5
Sed0021245 Sechium edule HOM05D002966 ORTHO05D003274 2.8e-25 119.0 77 74.0
FAN25G2501 Fragaria x ananassa HOM05D002966 ORTHO05D003274 3.7e-25 118.6 75 77.3
Lsat_1_v5_gn_2_120921 Lactuca sativa HOM05D002966 ORTHO05D003274 4.8e-25 118.2 77 77.9
PSO528G0254 Papaver somniferum HOM05D002966 ORTHO05D003274 4.8e-25 118.2 77 76.6
Aa31LG8G110 Aethionema arabicum HOM05D002966 ORTHO05D003274 2.4e-24 115.9 77 77.9
Sed0002257 Sechium edule HOM05D002966 ORTHO05D003274 9.0e-24 114.0 77 70.1
Ca_00875_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 3.4e-23 112.1 77 72.7
Ca_29620_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 3.4e-23 112.1 77 72.7
SalBow8G2246 Salvia bowleyana HOM05D002966 ORTHO05D003274 4.5e-23 111.7 77 71.4
Medtr8g445730 Medicago truncatula HOM05D002966 ORTHO05D003274 5.9e-23 111.3 77 71.4
TPR.G28745 Trifolium pratense HOM05D002966 ORTHO05D003274 7.6e-23 110.9 77 71.4
Glyma.04G098800 Glycine max HOM05D002966 ORTHO05D003274 2.2e-22 109.4 77 70.1
Glyma.06G100500 Glycine max HOM05D002966 ORTHO05D003274 5.0e-22 108.2 77 68.8
Psat4g176920 Pisum sativum HOM05D002966 ORTHO05D003274 6.5e-22 107.8 77 70.1
Lj3g0018587 Lotus japonicus HOM05D002966 ORTHO05D003274 1.1e-21 107.1 78 69.2
VMungo1309G0555 Vigna mungo HOM05D002966 ORTHO05D003274 1.1e-21 107.1 77 70.1
Phvul.009G033300 Phaseolus vulgaris HOM05D002966 ORTHO05D003274 1.9e-21 106.3 77 68.8
SHI21411 Sapria himalayana HOM05D002966 ORTHO05D003274 4.2e-21 105.1 77 64.9
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 5.5e-21 104.8 74 68.9
Cfa010900 Carpinus fangiana HOM05D002966 ORTHO05D003274 9.4e-21 104.0 69 76.8
MD01G1075700 Malus domestica HOM05D002966 ORTHO05D003274 1.2e-20 103.6 65 80.0
SGA_v2.0_scaffold7G03599 Striga asiatica HOM05D002966 ORTHO05D003274 1.2e-20 103.6 78 65.4
Lalb_Chr19g0133331 Lupinus albus HOM05D002966 ORTHO05D003274 6.1e-20 101.3 77 64.9
Lalb_Chr03g0031721 Lupinus albus HOM05D002966 ORTHO05D003274 1.4e-19 100.1 81 66.7
Lsat_1_v5_gn_4_112101 Lactuca sativa HOM05D002966 ORTHO05D003274 1.8e-19 99.8 68 77.9
MD12G1131000 Malus domestica HOM05D002966 ORTHO05D003274 2.3e-19 99.4 65 75.4
HPP92_000947 Vanilla planifolia HOM05D002966 ORTHO05D003274 6.7e-19 97.8 79 67.1
SGA_v2.0_scaffold239G44041 Striga asiatica HOM05D002966 ORTHO05D003274 1.9e-18 96.3 78 62.8
Zm00001eb213650 Zea mays HOM05D002966 ORTHO05D003274 2.2e-17 92.8 80 62.5
Zm00001eb059720 Zea mays HOM05D002966 ORTHO05D003274 4.1e-16 88.6 81 56.8
Os03g0778400 Oryza sativa ssp. japonica HOM05D002966 ORTHO05D003274 6.9e-16 87.8 83 56.6
Zm00001eb057330 Zea mays HOM05D002966 ORTHO05D003274 6.9e-16 87.8 81 56.8
Zm00001eb059740 Zea mays HOM05D002966 ORTHO05D003274 1.5e-15 86.7 81 55.6
Nitab4.5_0002633g0040 Nicotiana tabacum HOM05D002966 ORTHO05D003274 8.5e-14 80.9 60 68.3
Oeu034059.1 Olea europaea HOM05D002966 ORTHO05D003274 6.1e-12 74.7 48 81.2
SEGI_34145 Sequoiadendron giganteum HOM05D002966 ORTHO05D003274 1.5e-10 70.1 83 48.2
Peaxi162Scf00452g00614 Petunia axillaris HOM05D002966 ORTHO05D003274 2.0e-10 69.7 78 55.1
Cfa015983 Carpinus fangiana HOM05D000018 ORTHO05D001920 7.0e-08 61.2 33 84.8
SEGI_34566 Sequoiadendron giganteum HOM05D002966 ORTHO05D003274 3.8e-06 55.5 82 37.8


User provided reference genes

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