Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 0.0e+00 1849.3 907 100.0
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 0.0e+00 1610.1 884 91.1
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 4.3e-295 1018.1 802 69.7
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 6.7e-240 834.7 927 54.9
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 3.4e-220 769.2 941 51.5
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.7e-219 766.9 971 50.3
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 6.5e-219 765.0 995 48.8
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 1.9e-218 763.5 940 51.2
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 2.3e-216 756.5 933 52.1
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 1.1e-215 754.2 929 51.0
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 1.8e-213 746.9 932 50.5
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 3.8e-211 739.2 668 63.6
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 2.7e-209 733.0 938 49.5
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 4.0e-208 729.2 1072 45.3
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 1.2e-204 717.6 935 48.9
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 2.9e-203 713.0 972 47.9
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 3.2e-202 709.5 1043 45.7
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 2.3e-200 703.4 962 47.4
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 2.3e-200 703.4 916 49.3
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 6.8e-200 701.8 922 49.5
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 1.1e-197 694.5 928 47.5
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 8.6e-195 684.9 927 49.1
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 4.2e-194 682.6 1008 47.5
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 2.6e-191 673.3 912 48.2
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 4.4e-191 672.5 953 47.6
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 3.5e-188 662.9 1087 43.5
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 6.6e-187 658.7 891 48.3
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 1.1e-186 657.9 896 48.2
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 3.1e-184 649.8 905 47.6
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 5.2e-184 649.0 895 47.8
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.5e-183 647.5 960 46.6
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.9e-182 642.5 906 47.5
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.1e-181 641.3 903 47.5
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.9e-181 640.6 956 46.3
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 9.2e-181 638.3 922 45.1
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.5e-180 636.3 959 46.0
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 9.5e-178 628.2 910 45.8
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 1.2e-177 627.9 1087 43.1
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 6.8e-176 622.1 896 46.5
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 1.3e-174 617.8 892 46.1
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 1.1e-173 614.8 960 44.0
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 3.2e-173 613.2 834 47.6
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 1.3e-171 607.8 953 44.8
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.5e-170 604.4 486 66.5
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 5.6e-170 602.4 926 45.8
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 9.5e-170 601.7 839 47.0
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.2e-169 601.3 502 64.7
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.2e-169 601.3 529 63.7
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 1.6e-169 600.9 522 64.2
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 1.6e-169 600.9 888 45.3
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 1.6e-169 600.9 520 64.2
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 2.1e-169 600.5 507 64.9
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.1e-168 598.2 911 45.3
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 4.0e-168 596.3 907 43.1
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 1.3e-166 591.3 613 57.4
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 1.7e-166 590.9 946 44.4
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 2.2e-166 590.5 845 47.8
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 1.9e-165 587.4 450 69.1
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 3.2e-165 586.6 915 44.2
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.2e-164 584.7 907 45.3
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 6.0e-164 582.4 931 44.9
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 3.9e-163 579.7 943 44.2
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 5.1e-163 579.3 945 44.4
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 4.7e-161 572.8 888 45.4
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.1e-160 571.6 903 44.3
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 5.2e-160 569.3 551 57.9
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 6.4e-158 562.4 937 43.5
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 3.2e-157 560.1 889 43.2
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 5.4e-157 559.3 840 44.6
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 7.3e-154 548.9 493 63.3
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 4.9e-150 536.2 972 40.5
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 6.4e-150 535.8 910 42.3
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 2.7e-148 530.4 923 41.4
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 3.8e-142 510.0 418 63.9
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 4.9e-142 509.6 911 40.7
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 1.6e-140 504.6 945 41.0
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 1.0e-139 501.9 897 40.4
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 8.7e-139 498.8 496 56.5
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 3.7e-137 493.4 460 59.3
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 1.1e-136 491.9 955 39.9
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 1.7e-134 484.6 944 40.7
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 3.2e-133 480.3 899 38.6
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 9.3e-133 478.8 727 45.5
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 1.3e-131 474.9 891 38.6
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 3.3e-130 470.3 525 53.7
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 2.1e-129 467.6 458 56.6
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 2.4e-128 464.2 892 38.7
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 5.8e-127 459.5 441 58.0
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 1.7e-126 458.0 504 53.0
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 2.2e-126 457.6 441 57.8
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 3.8e-126 456.8 439 57.6
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 1.9e-125 454.5 442 57.7
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.3e-123 448.4 465 55.3
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 2.3e-123 447.6 492 53.5
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 2.3e-123 447.6 570 48.6
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 3.3e-122 443.7 480 53.8
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.2e-121 441.0 577 47.8
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 1.4e-120 438.3 469 54.4
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 2.4e-112 411.0 938 37.0
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 3.8e-110 403.7 415 55.2
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 2.5e-109 401.0 927 36.8
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 4.7e-108 396.7 295 69.8
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 1.7e-105 388.3 819 39.4
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 3.0e-83 314.3 275 62.2
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 3.7e-81 307.4 551 40.3
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 1.8e-67 261.9 636 37.1
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.6e-39 169.1 207 44.0
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 2.1e-39 168.7 111 75.7
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 3.6e-36 157.9 169 50.9
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.4e-35 156.0 113 69.0
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 5.5e-24 117.5 84 75.0
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 2.5e-21 108.6 153 46.4
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 7.4e-21 107.1 83 69.9
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 1.4e-16 92.8 81 63.0
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 8.2e-12 77.0 132 43.9
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 1.2e-10 73.2 106 46.2


User provided reference genes

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