Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 4.3e-220 767.7 393 100.0
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.3e-211 739.6 393 95.7
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 2.2e-171 605.9 376 82.4
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 8.3e-171 604.0 392 77.8
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 8.6e-168 594.0 392 75.8
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 4.0e-149 531.9 389 66.6
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 5.8e-148 528.1 393 65.6
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 9.9e-148 527.3 389 66.3
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 3.8e-147 525.4 391 66.5
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.0e-145 518.1 394 65.7
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 1.7e-144 516.5 394 65.5
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.9e-143 513.1 387 66.7
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 2.5e-143 512.7 391 64.7
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 2.5e-143 512.7 391 64.5
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 4.3e-143 511.9 393 64.4
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.6e-143 511.5 394 64.7
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 5.6e-143 511.5 394 64.7
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 2.8e-142 509.2 390 64.4
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 2.8e-142 509.2 389 65.3
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 8.1e-142 507.7 394 64.7
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.1e-141 507.3 391 63.9
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 1.4e-141 506.9 392 64.5
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 4.5e-140 501.9 392 64.3
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 1.3e-139 500.4 392 64.8
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 6.4e-139 498.0 393 63.1
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 3.2e-138 495.7 394 62.9
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.2e-137 493.8 392 62.8
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.6e-137 493.4 392 62.8
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.6e-137 493.4 391 62.1
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 7.9e-137 491.1 392 62.8
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.3e-136 490.3 394 62.7
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 4.3e-135 485.3 392 62.8
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 7.4e-135 484.6 390 61.3
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 1.6e-134 483.4 393 61.1
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 2.8e-134 482.6 391 60.9
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 3.6e-134 482.3 391 62.7
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 8.1e-134 481.1 392 62.2
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 1.1e-133 480.7 392 61.0
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.8e-133 479.9 391 60.9
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 2.4e-133 479.6 393 61.1
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 3.1e-133 479.2 389 60.9
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 6.9e-133 478.0 391 61.9
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 4.5e-132 475.3 393 60.3
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 4.2e-130 468.8 395 60.0
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 5.5e-130 468.4 391 59.3
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 1.6e-129 466.8 392 60.2
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 7.9e-129 464.5 392 59.7
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 7.9e-129 464.5 392 59.9
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.0e-128 464.2 373 60.9
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 1.8e-128 463.4 391 58.8
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 1.8e-128 463.4 392 59.2
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 2.3e-128 463.0 392 58.4
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 3.0e-128 462.6 392 59.2
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 5.6e-127 458.4 393 59.3
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 9.6e-127 457.6 353 65.2
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 6.2e-126 454.9 391 57.8
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 1.3e-123 447.2 388 56.7
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 4.2e-122 442.2 391 59.3
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 9.3e-122 441.0 394 58.9
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 6.0e-121 438.3 393 54.7
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 7.9e-121 438.0 395 58.2
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 3.0e-120 436.0 391 58.1
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.5e-119 433.7 392 57.7
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 5.7e-119 431.8 411 55.5
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 5.7e-119 431.8 389 57.1
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.3e-118 430.6 395 57.2
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 8.2e-118 427.9 392 55.1
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 2.6e-116 422.9 418 55.0
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 5.9e-116 421.8 390 55.4
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 3.8e-115 419.1 390 55.9
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 3.8e-115 419.1 390 54.6
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 1.6e-113 413.7 417 52.0
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 1.6e-113 413.7 417 52.0
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 7.9e-113 411.4 389 53.5
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 3.0e-112 409.5 391 51.9
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 3.9e-112 409.1 417 51.3
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 9.7e-111 404.4 393 52.2
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 3.7e-110 402.5 389 50.9
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 6.3e-110 401.7 389 52.2
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 6.3e-110 401.7 393 51.9
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 6.3e-110 401.7 389 51.2
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 1.2e-108 397.5 412 50.7
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 4.5e-108 395.6 419 52.0
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 1.7e-107 393.7 395 52.9
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 1.7e-107 393.7 393 52.2
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 6.1e-105 385.2 393 51.1
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 2.6e-103 379.8 391 51.2
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 3.3e-103 379.4 392 51.5
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 7.4e-103 378.3 392 48.7
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 7.7e-100 368.2 314 60.5
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 3.8e-99 365.9 341 57.2
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 2.5e-98 363.2 397 48.6
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.6e-97 360.5 386 49.7
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 2.1e-97 360.1 398 48.5
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.6e-97 359.4 400 47.0
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 3.6e-97 359.4 388 49.7
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 6.1e-97 358.6 392 47.4
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 7.9e-97 358.2 392 47.2
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.0e-96 357.8 394 46.4
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.8e-96 357.1 397 47.6
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 8.8e-96 354.8 400 47.0
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 1.1e-95 354.4 263 64.6
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.2e-91 340.1 393 45.5
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 6.5e-91 338.6 393 47.3
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 1.6e-89 334.0 393 45.5
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 2.7e-89 333.2 394 45.7
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 4.0e-88 329.3 393 44.5
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 4.1e-85 319.3 333 49.2
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 5.3e-85 318.9 374 45.2
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.0e-84 317.0 272 58.1
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.6e-68 264.2 294 47.3
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 3.8e-67 259.6 421 39.9
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 1.4e-64 251.1 179 70.4
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 2.3e-43 180.6 261 37.2
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 3.9e-43 179.9 311 38.9
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 3.8e-38 163.3 229 42.8
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 1.1e-37 161.8 370 31.1
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 4.1e-37 159.8 393 29.0
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 3.1e-32 143.7 336 30.7
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 1.2e-28 131.7 440 28.6
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 3.5e-28 130.2 312 32.7
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 3.3e-26 123.6 180 43.3
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 4.3e-26 123.2 395 26.3
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 4.3e-26 123.2 395 26.3
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 1.8e-24 117.9 179 41.9
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 4.9e-22 109.8 351 24.8
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 5.4e-21 106.3 104 51.0
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 2.1e-20 104.4 345 26.4
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 1.4e-13 81.6 282 24.8
COL.COLO4_31086 Corchorus olitorius HOM05D002504 ORTHO05D007555 4.3e-10 70.1 62 51.6
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 5.8e-07 59.7 47 59.6


User provided reference genes

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