Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 2.9e-154 548.5 271 100.0
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 3.0e-143 511.9 306 85.6
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 1.6e-125 453.0 263 82.5
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 7.6e-123 444.1 270 83.0
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 3.1e-116 422.2 256 79.3
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 7.6e-115 417.5 255 78.8
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 2.4e-113 412.5 270 74.4
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 7.1e-113 411.0 268 75.4
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 6.0e-112 407.9 270 73.3
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 7.9e-112 407.5 257 77.0
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 9.6e-110 400.6 253 74.3
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 2.1e-109 399.4 244 77.9
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.1e-108 397.1 255 74.1
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 1.4e-108 396.7 257 73.9
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.4e-108 396.0 270 71.5
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 4.5e-107 391.7 270 71.5
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.6e-107 391.0 270 71.1
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 7.6e-107 391.0 256 73.4
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.2e-106 389.4 255 73.3
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.2e-105 385.6 268 71.6
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 7.1e-105 384.4 254 72.4
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 9.3e-105 384.0 256 72.3
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 9.3e-105 384.0 260 72.3
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 9.3e-105 384.0 256 72.3
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.2e-104 383.6 247 71.3
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.2e-104 383.6 259 71.8
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 1.2e-104 383.6 254 73.2
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.6e-104 383.3 256 72.3
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 3.5e-104 382.1 256 71.5
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 6.0e-104 381.3 259 70.7
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 6.0e-104 381.3 259 71.4
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.0e-103 380.6 254 70.9
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.8e-103 379.8 258 68.6
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.3e-103 379.4 268 70.5
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 3.0e-103 379.0 258 70.5
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 6.7e-103 377.9 268 70.5
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 8.7e-103 377.5 254 68.9
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.1e-102 377.1 254 69.7
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.5e-102 376.7 268 70.1
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.5e-102 376.7 258 70.5
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.9e-102 376.3 265 68.3
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.9e-102 376.3 256 71.5
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.3e-102 375.2 268 70.5
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 7.4e-102 374.4 254 70.9
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 7.4e-102 374.4 274 68.6
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 9.7e-102 374.0 264 70.1
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.3e-101 373.6 264 69.7
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.3e-101 371.3 268 66.0
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 8.2e-101 370.9 254 71.3
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.4e-100 370.2 274 64.6
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 2.4e-100 369.4 255 71.0
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 4.1e-100 368.6 252 70.6
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 5.3e-100 368.2 224 75.9
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.2e-99 367.1 239 71.1
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 1.2e-99 367.1 263 69.6
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.5e-99 366.7 264 68.6
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.0e-99 366.3 241 69.7
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 3.4e-99 365.5 248 66.1
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 4.5e-99 365.2 253 64.0
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 5.9e-99 364.8 246 67.5
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.3e-98 363.6 242 69.8
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 2.2e-98 362.8 245 70.2
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 2.2e-98 362.8 255 65.9
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 3.8e-98 362.1 247 68.0
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 5.0e-98 361.7 242 69.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 6.5e-98 361.3 247 67.2
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 1.1e-97 360.5 257 67.3
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.4e-97 360.1 268 65.3
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.5e-97 359.4 253 67.2
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 5.5e-97 358.2 247 67.2
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 7.2e-97 357.8 252 66.7
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 9.3e-97 357.5 242 69.0
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 2.7e-96 355.9 245 65.3
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 3.6e-96 355.5 245 70.2
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 7.9e-96 354.4 253 65.2
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 1.4e-95 353.6 256 64.1
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.4e-95 353.6 245 65.3
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.4e-95 353.6 246 67.1
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.1e-94 350.5 281 61.9
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 3.3e-94 349.0 241 71.0
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 3.3e-94 349.0 255 64.7
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 4.3e-94 348.6 256 63.7
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.3e-93 347.1 256 62.9
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.7e-93 346.7 240 68.3
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 2.8e-93 345.9 256 63.3
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 4.8e-93 345.1 268 62.7
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.1e-92 344.0 252 63.5
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.1e-92 344.0 268 61.6
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 1.8e-92 343.2 309 57.3
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.8e-92 343.2 262 61.5
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 4.1e-92 342.0 258 60.5
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.0e-91 339.7 254 65.0
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 2.6e-91 339.3 256 62.9
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 3.4e-91 339.0 252 63.9
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 4.5e-91 338.6 262 60.3
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 7.7e-91 337.8 252 62.7
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 7.7e-91 337.8 252 62.7
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.8e-90 335.5 263 62.0
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.8e-90 335.5 263 62.0
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 6.5e-90 334.7 256 61.3
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 6.5e-90 334.7 261 60.5
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 8.5e-90 334.3 251 63.7
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 3.2e-89 332.4 200 79.5
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 4.2e-89 332.0 200 79.5
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 5.5e-89 331.6 261 59.8
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 6.1e-88 328.2 261 60.2
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 2.3e-87 326.2 261 60.2
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 9.7e-86 320.9 285 57.9
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 2.2e-85 319.7 252 61.1
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.8e-84 316.6 250 60.4
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 2.6e-83 312.8 215 72.6
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.2e-80 303.9 215 66.0
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 1.2e-80 303.9 169 81.7
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 2.3e-79 299.7 188 76.1
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 3.9e-79 298.9 197 69.5
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.3e-74 283.9 254 57.9
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.9e-73 280.0 245 54.7
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.5e-73 278.5 245 56.3
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 8.0e-72 274.6 260 53.5
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 8.0e-72 274.6 245 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 5.2e-71 271.9 228 54.8
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 8.5e-66 254.6 129 89.9
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 7.2e-65 251.5 194 61.3
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 4.7e-64 248.8 179 61.5
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.3e-63 246.5 238 49.2
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.2e-59 234.2 168 61.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.7e-58 230.3 263 48.3
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 6.1e-56 221.9 144 74.3
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 1.5e-54 217.2 216 49.5
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 4.4e-54 215.7 128 78.1
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.3e-53 214.2 189 54.0
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 1.6e-51 207.2 126 76.2
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 2.1e-48 196.8 254 45.3
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 8.9e-47 191.4 143 62.9
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.4e-44 184.1 198 52.0
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 3.5e-43 179.5 123 69.1
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.3e-42 177.6 109 74.3
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.0e-42 176.4 277 39.0
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.5e-41 174.1 199 44.7
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 4.3e-41 172.6 128 60.2
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 1.8e-39 167.2 290 35.5
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-32 144.4 116 64.7
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 3.2e-28 129.8 79 74.7
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 1.2e-27 127.9 72 80.6
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.7e-19 100.1 99 45.5
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 8.1e-16 88.6 60 68.3
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 2.0e-14 84.0 69 58.0
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 2.1e-08 63.9 166 25.9
Pp3c1_38790 Physcomitrium patens HOM05D004915 ORTHO05D315101 3.4e-06 56.6 40 67.5


User provided reference genes

Program Settings