Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 0.0e+00 1416.0 701 100.0
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 0.0e+00 1235.7 851 76.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 0.0e+00 1133.6 703 78.8
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 0.0e+00 1082.0 705 74.3
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.9e-282 975.7 703 67.6
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 6.7e-280 967.2 702 67.2
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.9e-274 949.1 705 66.8
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 6.0e-273 944.1 689 66.0
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 5.5e-266 921.0 670 67.2
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 3.9e-264 914.8 695 64.2
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.0e-263 912.5 687 64.3
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 5.9e-260 901.0 710 63.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.1e-258 896.7 689 62.8
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.1e-258 896.7 686 64.6
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.4e-258 896.3 693 64.2
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.5e-258 895.6 686 64.0
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 7.2e-258 894.0 709 63.0
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.0e-256 890.2 687 62.9
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.3e-256 889.0 685 64.1
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.0e-256 888.6 699 62.9
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 5.1e-256 887.9 686 63.0
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.0e-255 885.9 715 61.1
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 2.0e-255 885.9 694 62.5
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.6e-255 885.6 686 64.0
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 2.2e-254 882.5 691 63.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.3e-248 862.4 642 64.5
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 5.2e-248 861.3 697 61.4
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.6e-247 859.0 708 62.0
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.4e-247 857.4 732 58.9
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.3e-246 856.7 700 63.1
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 7.0e-245 850.9 701 61.1
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.2e-244 850.1 714 61.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.8e-238 828.9 703 59.5
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.3e-235 820.1 719 57.9
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 2.9e-235 818.9 695 58.7
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 3.0e-232 808.9 697 58.7
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.2e-232 808.1 696 59.3
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 4.4e-231 805.1 712 56.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 7.5e-231 804.3 705 57.9
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 5.4e-229 798.1 705 56.9
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 5.9e-228 794.7 690 57.5
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 7.7e-228 794.3 724 54.6
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.0e-227 793.9 698 55.6
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.9e-227 792.3 708 55.8
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.6e-227 791.2 698 59.0
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.1e-226 790.4 717 56.1
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 4.2e-226 788.5 690 57.7
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 7.2e-226 787.7 727 56.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.8e-224 783.1 695 58.3
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 5.7e-223 778.1 713 54.4
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.7e-222 776.5 695 57.7
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 3.1e-221 772.3 704 56.5
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 7.0e-221 771.2 718 55.2
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.2e-220 770.4 708 55.4
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.9e-219 765.4 734 54.4
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 5.0e-219 765.0 703 54.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.5e-218 763.5 700 55.9
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 5.6e-218 761.5 716 53.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.6e-218 761.5 719 54.8
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.7e-217 758.4 720 54.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.4e-216 756.9 702 54.7
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 8.9e-216 754.2 703 54.1
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.5e-215 753.4 722 53.9
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 2.0e-215 753.1 702 54.3
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.7e-214 748.8 711 53.6
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.9e-214 748.4 698 55.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.1e-213 747.3 708 54.4
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.1e-213 747.3 707 52.9
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 5.4e-213 745.0 705 55.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.6e-209 733.4 767 48.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.4e-208 730.3 687 53.4
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 2.0e-207 726.5 734 51.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 7.5e-207 724.5 701 52.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.2e-206 723.0 688 53.6
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 2.3e-203 713.0 654 55.2
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.0e-195 687.6 600 56.7
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 3.9e-195 685.6 648 55.6
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 3.8e-190 669.1 669 51.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 3.9e-187 659.1 695 48.3
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.8e-184 650.2 724 48.2
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 9.0e-184 647.9 714 50.3
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.8e-182 642.5 740 48.2
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 8.7e-179 631.3 688 48.1
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.4e-176 624.0 755 45.6
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 6.7e-163 578.6 423 67.1
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 2.8e-161 573.2 590 52.7
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.8e-155 553.9 462 61.5
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.8e-155 553.9 688 45.6
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.3e-153 547.7 572 49.8
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.8e-147 527.3 688 42.0
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.8e-145 520.0 656 44.8
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.4e-144 517.7 377 64.7
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 9.1e-144 515.0 477 54.9
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 3.2e-141 506.5 455 56.0
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.7e-126 457.6 656 39.2
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 3.2e-125 453.4 333 66.7
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.9e-117 427.6 572 41.1
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.0e-107 395.2 519 39.9
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 4.9e-105 386.3 260 68.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 1.4e-104 384.8 321 62.0
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-88 330.1 353 46.2
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.3e-86 325.1 269 59.9
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.8e-75 288.1 277 57.4
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.2e-66 258.8 296 47.0
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 3.4e-66 257.3 227 53.7
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 7.6e-66 256.1 261 50.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 3.8e-65 253.8 197 65.0
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-62 245.0 205 60.5
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.3e-61 240.4 262 46.9
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.0e-59 232.6 332 39.2
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.5e-56 223.4 520 32.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.1e-47 194.9 219 47.5
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 8.7e-46 189.5 155 61.9
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.7e-39 167.9 305 35.1
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 4.6e-39 167.2 158 52.5
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.0e-38 164.5 332 34.0
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-37 161.8 188 46.8
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-36 159.1 288 34.7
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 6.5e-33 146.7 172 45.3
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 8.5e-33 146.4 98 67.3
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.5e-33 146.4 329 32.2
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.2e-32 143.3 331 32.9
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-30 139.0 195 37.4
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 8.8e-30 136.3 481 25.6
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.1e-29 136.0 143 44.8
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 3.3e-29 134.4 130 54.6
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.3e-29 134.0 340 30.9
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 2.2e-28 131.7 435 24.4
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-27 128.3 249 37.3
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.3e-27 127.1 285 31.9
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.5e-24 117.1 86 66.3
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-23 115.5 86 65.1
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.1e-23 115.2 391 27.6
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 6.1e-23 113.6 111 55.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-22 112.5 86 64.0
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.5e-21 109.0 151 44.4
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-21 109.0 137 44.5
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-21 107.1 86 62.8
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-20 104.8 222 34.2
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 4.1e-19 100.9 135 44.4
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 2.2e-17 95.1 76 60.5
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 5.0e-17 94.0 56 80.4
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 5.5e-16 90.5 128 45.3
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 2.1e-15 88.6 61 65.6
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-15 88.2 85 52.9
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 6.1e-15 87.0 56 78.6
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 8.0e-15 86.7 98 48.0
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-15 86.7 175 34.9
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.4e-14 85.9 123 36.6
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 4.4e-13 80.9 81 44.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 9.7e-13 79.7 66 60.6
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.7e-12 79.0 59 64.4
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 3.5e-10 71.2 46 65.2
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.0e-09 67.4 175 27.4
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-07 60.5 41 65.9
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.0e-06 59.7 42 59.5
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.0e-06 58.2 41 63.4


User provided reference genes

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