Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.4e-153 546.2 258 100.0
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.3e-148 529.6 258 96.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.6e-144 515.4 251 96.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 5.5e-139 497.7 257 89.1
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 3.0e-137 491.9 258 88.4
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.5e-136 489.6 254 88.2
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 9.1e-134 480.3 264 83.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.7e-132 476.1 253 86.2
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 6.5e-132 474.2 254 86.2
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 8.5e-132 473.8 254 83.5
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.1e-131 473.4 268 82.8
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.1e-131 473.4 267 81.3
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.9e-131 472.6 254 85.0
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.2e-131 471.5 254 84.6
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 9.4e-131 470.3 264 80.7
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 2.1e-130 469.2 251 84.9
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.7e-130 468.8 258 82.9
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 3.6e-130 468.4 253 83.8
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.7e-130 468.0 254 84.6
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 6.1e-130 467.6 262 81.7
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 8.0e-130 467.2 252 85.7
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 8.0e-130 467.2 268 81.0
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.4e-129 466.5 264 82.2
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.3e-129 465.7 253 83.4
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 3.0e-129 465.3 254 81.9
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 3.0e-129 465.3 254 81.9
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.0e-129 465.3 255 83.9
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 6.8e-129 464.2 255 83.9
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.5e-128 463.0 253 81.8
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 2.0e-128 462.6 254 83.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 9.8e-128 460.3 254 83.9
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.7e-127 459.5 257 82.5
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 2.8e-127 458.8 257 82.1
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 2.8e-127 458.8 257 82.1
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-126 456.4 254 82.7
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.4e-126 456.4 264 80.7
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 3.1e-126 455.3 264 79.9
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 3.1e-126 455.3 253 81.4
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 3.1e-126 455.3 254 82.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.1e-126 454.9 257 81.3
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 7.0e-126 454.1 265 76.6
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.2e-125 453.4 254 79.5
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.6e-125 453.0 254 81.9
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-125 452.6 257 80.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 4.5e-125 451.4 264 79.5
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.0e-124 450.3 256 80.1
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 2.2e-124 449.1 264 79.2
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.9e-124 448.7 253 82.2
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 6.5e-124 447.6 264 80.7
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 8.5e-124 447.2 256 79.7
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.1e-123 446.8 255 79.6
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.1e-123 446.8 253 81.0
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 1.1e-123 446.8 253 81.8
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.5e-123 446.4 253 80.6
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.9e-123 446.0 255 80.0
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 2.5e-123 445.7 256 79.3
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 3.2e-123 445.3 256 79.3
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 5.5e-123 444.5 256 78.9
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 7.2e-123 444.1 252 80.6
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.2e-122 443.4 254 79.5
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 4.7e-122 441.4 262 76.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.1e-122 441.0 254 81.5
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.0e-121 440.3 256 78.1
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 3.0e-121 438.7 255 79.2
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 3.0e-121 438.7 255 79.6
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 8.8e-121 437.2 255 79.2
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.5e-120 436.4 254 79.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.5e-120 436.4 262 77.1
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 2.6e-120 435.6 254 78.7
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.4e-120 435.3 254 79.5
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 3.4e-120 435.3 258 77.5
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 4.4e-120 434.9 254 78.7
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 5.7e-120 434.5 255 79.2
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 7.5e-120 434.1 255 78.4
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 9.8e-120 433.7 254 77.6
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.7e-119 433.0 254 78.7
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.2e-119 432.6 255 78.8
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 3.7e-119 431.8 257 76.7
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 3.7e-119 431.8 260 76.9
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.3e-119 430.6 260 78.1
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 7.0e-118 427.6 254 78.0
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 9.1e-118 427.2 227 86.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 9.1e-118 427.2 254 76.4
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.2e-117 426.8 250 77.2
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.2e-117 426.8 254 76.8
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 2.0e-117 426.0 253 76.7
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.7e-117 425.6 256 77.0
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 4.5e-117 424.9 254 76.4
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.9e-116 422.2 268 73.5
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 5.0e-116 421.4 254 74.0
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 3.3e-115 418.7 253 73.9
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 5.5e-115 417.9 250 76.0
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.8e-114 415.6 252 77.8
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 6.1e-114 414.5 254 77.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 6.8e-113 411.0 250 74.0
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 8.9e-113 410.6 277 69.0
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 1.2e-112 410.2 278 69.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.4e-112 408.3 275 69.5
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 3.7e-111 405.2 258 74.0
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 4.9e-111 404.8 251 73.7
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 2.4e-110 402.5 270 70.4
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.6e-109 399.8 259 73.0
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 2.0e-109 399.4 231 74.5
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.6e-109 398.3 224 78.1
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 1.0e-108 397.1 254 73.6
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.9e-108 395.6 258 71.7
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.6e-106 389.8 289 66.1
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.8e-106 389.0 210 82.9
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 5.2e-105 384.8 231 71.4
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.4e-104 382.1 216 78.2
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 1.7e-103 379.8 232 78.9
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 3.7e-103 378.6 235 75.7
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 6.4e-103 377.9 222 77.5
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 7.8e-101 370.9 239 70.3
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.7e-100 369.8 208 79.8
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 2.3e-100 369.4 225 69.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 5.6e-99 364.8 193 81.9
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 9.5e-99 364.0 226 69.5
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 3.6e-98 362.1 216 71.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.3e-97 359.4 254 68.5
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 4.0e-97 358.6 217 70.5
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.3e-92 342.8 221 71.0
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.6e-90 335.5 294 57.5
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 5.8e-88 328.2 164 86.6
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.1e-86 321.2 324 51.9
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 4.6e-85 318.5 280 58.2
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 2.1e-82 309.7 162 85.8
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.1e-82 309.7 198 68.7
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 7.6e-80 301.2 215 59.1
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 3.9e-76 288.9 165 79.4
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.9e-67 260.0 163 74.2
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 4.8e-66 255.4 141 83.7
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.5e-64 248.8 138 79.7
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.7e-61 239.6 241 52.3
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.5e-59 233.8 208 57.2
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.3e-51 206.1 121 74.4
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.1e-46 191.0 111 79.3
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.3e-35 152.5 105 71.4
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.3e-26 124.4 72 80.6
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.7e-26 124.0 65 93.8
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.2e-26 123.6 83 69.9
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.8e-25 120.6 68 70.6
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 7.0e-25 118.6 81 67.9
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.9e-24 115.5 65 75.4
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 4.0e-20 102.8 63 77.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.1e-17 94.7 51 78.4
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 5.9e-16 89.0 84 51.2
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 2.2e-15 87.0 92 55.4
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.5e-14 84.3 86 55.8
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.5e-14 84.3 43 79.1
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 6.8e-12 75.5 52 67.3
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 6.3e-10 68.9 44 75.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 4.1e-09 66.2 47 68.1
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 7.0e-09 65.5 50 60.0
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.3e-07 61.2 66 51.5
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 1.9e-06 57.4 48 52.1


User provided reference genes

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