Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 0.0e+00 1376.7 676 100.0
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 0.0e+00 1285.8 701 91.6
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.0e-301 1039.6 647 80.2
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.2e-291 1006.1 650 76.2
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 6.4e-288 993.8 649 75.0
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.4e-287 991.9 651 74.5
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 9.0e-282 973.4 647 75.4
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.9e-276 955.7 647 73.3
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 2.5e-276 955.3 650 72.5
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 3.3e-276 954.9 650 70.2
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 1.6e-275 952.6 649 71.8
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 5.3e-274 947.6 649 72.4
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.3e-272 943.0 653 72.9
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 3.2e-271 938.3 647 71.9
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 7.1e-271 937.2 536 85.3
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 3.0e-269 931.8 640 69.8
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.5e-268 928.7 641 69.6
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 7.4e-268 927.2 652 70.9
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.6e-267 926.0 656 69.7
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 6.2e-267 924.1 656 69.8
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.1e-266 923.3 651 70.5
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.5e-263 912.1 651 69.4
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 4.2e-263 911.4 652 70.1
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.0e-261 906.7 653 69.5
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.3e-261 905.6 645 69.8
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 9.7e-260 900.2 651 68.8
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.3e-259 899.8 649 71.0
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.8e-259 897.9 644 69.3
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.8e-259 897.9 644 69.3
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 8.2e-259 897.1 649 69.2
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 1.8e-258 896.0 643 68.7
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 9.0e-258 893.6 640 69.7
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.5e-257 892.9 650 68.6
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 6.5e-256 887.5 647 68.2
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 8.5e-256 887.1 645 68.5
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 8.5e-256 887.1 646 69.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.4e-255 886.3 645 68.5
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 7.2e-255 884.0 652 68.3
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 9.4e-255 883.6 649 68.1
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.2e-254 883.2 646 68.4
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 2.7e-254 882.1 645 68.1
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 3.6e-254 881.7 652 67.5
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 6.7e-253 877.5 646 68.0
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 1.1e-252 876.7 645 68.1
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 2.5e-252 875.5 645 67.9
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.3e-252 875.2 609 69.8
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 3.3e-252 875.2 622 70.1
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 2.2e-251 872.5 645 67.6
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 4.1e-250 868.2 647 67.5
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 4.1e-250 868.2 642 67.3
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 5.3e-250 867.8 658 67.2
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 9.1e-250 867.1 645 66.0
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.2e-249 866.7 657 66.7
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.5e-249 866.3 646 67.8
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 2.0e-249 865.9 644 68.3
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.6e-249 865.5 652 65.0
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 3.4e-249 865.1 647 67.2
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 1.4e-247 859.8 621 69.7
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 4.2e-247 858.2 653 64.3
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 4.7e-246 854.7 657 66.2
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 7.9e-246 854.0 653 65.1
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.4e-245 853.2 653 64.2
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.5e-244 849.7 658 64.0
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 2.6e-244 849.0 650 62.9
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 4.8e-243 844.7 653 63.9
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 4.8e-243 844.7 659 63.0
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 4.8e-243 844.7 650 66.6
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 6.3e-243 844.3 657 64.4
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 1.8e-242 842.8 648 64.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.8e-242 842.8 657 65.0
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.6e-241 839.0 651 64.5
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.3e-240 836.6 651 64.8
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 2.9e-240 835.5 654 63.0
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 9.4e-239 830.5 661 64.1
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 5.2e-237 824.7 653 62.8
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 8.8e-237 823.9 646 63.8
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 4.1e-234 815.1 648 63.1
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 2.2e-232 809.3 643 64.1
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 5.5e-231 804.7 612 65.7
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 6.3e-227 791.2 681 60.5
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 2.6e-220 769.2 650 58.5
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.3e-216 756.9 644 59.6
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 2.3e-216 756.1 644 59.0
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.7e-214 748.4 646 57.3
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.8e-210 736.5 575 63.5
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 3.0e-200 702.6 502 69.3
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 9.5e-199 697.6 642 56.1
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 2.4e-194 682.9 487 70.4
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 2.4e-186 656.4 678 52.5
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.2e-186 656.0 586 55.8
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 7.1e-186 654.8 614 57.7
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 9.2e-186 654.4 572 61.0
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 3.2e-170 602.8 656 49.7
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.2e-169 600.9 479 64.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 1.2e-164 584.3 593 54.3
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 7.4e-151 538.5 647 44.2
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.9e-139 500.0 637 44.6
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 3.3e-135 486.5 625 43.7
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 4.1e-133 479.6 546 50.4
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 3.7e-126 456.4 252 85.3
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 7.2e-114 415.6 361 61.2
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 1.5e-111 407.9 744 35.9
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 4.4e-103 379.8 478 43.7
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 4.9e-102 376.3 427 47.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 2.3e-96 357.5 634 36.9
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 4.1e-93 346.7 341 51.9
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 3.5e-92 343.6 294 61.6
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.1e-90 338.6 176 86.4
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 1.1e-80 305.4 271 57.6
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.7e-78 298.1 195 72.8
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.4e-61 241.1 220 55.9
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 2.2e-54 218.0 170 64.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 9.3e-53 212.6 102 92.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 2.3e-51 208.0 104 85.6
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.3e-41 175.6 496 31.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.8e-35 155.2 194 44.3
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 2.5e-34 151.4 136 59.6
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 1.6e-33 148.7 196 39.8
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 4.5e-31 140.6 155 50.3
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.5e-26 125.6 86 70.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 7.4e-26 123.2 58 87.9
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.4e-24 119.0 76 75.0
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 7.7e-23 113.2 102 53.9
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 7.7e-23 113.2 83 63.9
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 5.7e-18 97.1 72 61.1
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 2.9e-14 84.7 74 59.5
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 3.8e-14 84.3 76 57.9
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 6.5e-14 83.6 74 59.5
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 8.5e-14 83.2 74 58.1
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 4.2e-13 80.9 74 56.8
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 9.4e-13 79.7 100 50.0
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 2.7e-12 78.2 74 56.8
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 6.1e-12 77.0 96 50.0
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 1.0e-11 76.3 141 40.4
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.1e-10 72.8 93 46.2
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 2.6e-10 71.6 93 45.2
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 1.7e-09 68.9 110 30.9


User provided reference genes

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