Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 0.0e+00 1263.1 659 100.0
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 0.0e+00 1187.9 683 92.1
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.9e-292 1008.8 655 82.6
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 9.7e-265 916.8 655 73.0
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 4.1e-263 911.4 653 73.4
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 3.5e-262 908.3 657 73.5
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 2.9e-261 905.2 636 75.0
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.6e-259 899.4 659 73.3
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.0e-258 896.7 646 71.8
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.8e-258 896.0 659 73.0
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.0e-258 895.2 659 73.0
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 4.4e-257 891.3 648 71.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.2e-254 883.2 635 71.8
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.7e-254 882.1 657 70.3
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 5.9e-254 880.9 660 72.1
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.0e-253 880.2 634 71.6
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.5e-252 876.3 647 71.7
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.5e-252 875.5 639 72.0
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.2e-252 875.2 639 71.8
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.2e-251 873.2 642 72.6
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 8.0e-251 870.5 627 71.6
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 4.0e-250 868.2 650 69.7
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 6.8e-250 867.5 647 70.2
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 6.8e-250 867.5 614 73.9
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.2e-249 866.7 657 69.1
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 4.4e-249 864.8 643 71.1
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 9.8e-249 863.6 613 73.4
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 9.8e-249 863.6 613 73.4
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 5.4e-247 857.8 700 65.6
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 1.0e-245 853.6 537 81.6
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.6e-243 846.3 619 70.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 3.6e-243 845.1 660 68.2
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 4.7e-243 844.7 644 70.7
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.8e-242 842.8 622 70.9
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 3.0e-242 842.0 639 72.9
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 6.8e-242 840.9 625 73.6
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.0e-241 839.3 622 69.8
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.6e-241 839.0 662 68.7
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 3.4e-241 838.6 652 68.1
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 2.2e-240 835.9 639 70.3
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.7e-240 835.1 546 78.0
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 4.1e-239 831.6 619 69.1
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.0e-238 829.3 622 69.3
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.5e-236 823.2 653 66.0
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.5e-236 823.2 624 69.1
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 9.5e-236 820.5 635 69.1
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 6.8e-234 814.3 658 67.6
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.2e-233 813.5 621 70.2
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.6e-233 812.4 625 69.9
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 2.6e-233 812.4 619 68.5
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 5.8e-233 811.2 667 66.1
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.3e-232 810.1 611 72.2
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 3.5e-230 802.0 651 65.4
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 3.5e-230 802.0 661 64.3
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 4.6e-230 801.6 655 66.4
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.7e-229 799.7 561 73.3
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 3.0e-229 798.9 632 66.0
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 4.3e-228 795.0 654 65.1
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 5.6e-228 794.7 621 68.9
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 9.5e-228 793.9 575 69.6
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.6e-227 793.1 645 65.6
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 6.2e-227 791.2 573 70.2
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.1e-226 788.9 624 69.1
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 6.8e-226 787.7 610 68.4
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 6.8e-226 787.7 654 63.8
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 1.2e-225 786.9 653 63.7
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 2.7e-222 775.8 614 69.4
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.0e-221 773.9 659 63.3
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.5e-220 769.2 627 65.6
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 1.2e-219 766.9 627 64.9
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 5.2e-218 761.5 577 69.0
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 2.2e-216 756.1 524 72.9
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.7e-213 746.5 652 62.3
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.0e-213 745.7 630 63.8
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 3.0e-213 745.7 695 58.3
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 8.6e-213 744.2 679 61.3
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 4.3e-212 741.9 543 70.7
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.6e-209 732.6 656 61.1
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 2.9e-208 729.2 656 60.8
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 4.3e-204 715.3 648 60.8
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 9.6e-204 714.1 655 59.2
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 4.7e-203 711.8 655 59.1
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 2.0e-201 706.4 644 58.4
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 2.0e-193 679.9 630 58.1
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 8.4e-192 674.5 507 71.4
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 4.3e-188 662.1 629 56.3
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 5.5e-183 645.2 491 69.9
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.6e-182 643.7 652 53.7
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 5.6e-180 635.2 387 85.0
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 7.1e-175 618.2 626 54.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 8.7e-173 611.3 461 69.4
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-170 604.4 547 60.7
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 4.1e-170 602.4 459 69.1
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 8.2e-163 578.2 639 55.1
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 7.4e-156 555.1 629 49.4
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 9.7e-156 554.7 617 53.3
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.4e-151 538.1 423 66.0
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 1.4e-149 534.3 365 74.0
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.8e-144 516.2 364 74.2
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.5e-143 514.2 634 47.2
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.0e-141 508.1 613 47.8
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 4.4e-140 502.7 636 45.8
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.7e-132 475.7 332 70.5
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.1e-127 461.5 506 53.2
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.6e-126 457.6 316 71.2
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-114 418.3 542 46.3
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.1e-98 363.2 275 70.9
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 5.2e-93 346.3 315 60.3
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.9e-84 315.5 215 73.0
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.4e-77 295.0 207 77.8
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.2e-76 292.0 352 48.3
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 5.8e-76 289.7 278 59.0
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.8e-75 287.0 194 70.1
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.6e-73 280.0 206 68.9
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-68 263.8 200 65.5
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.1e-62 244.6 172 72.7
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.0e-56 225.7 177 66.7
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-52 212.2 161 73.3
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.6e-52 211.1 161 72.7
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 3.6e-49 200.7 168 63.7
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-47 195.3 123 73.2
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.2e-43 181.4 173 60.7
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 9.4e-42 176.0 237 48.1
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.7e-38 165.2 169 60.9
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.3e-37 160.2 105 71.4
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 4.7e-33 147.1 186 47.3
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 6.1e-33 146.7 109 68.8
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.2e-32 143.7 93 74.2
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.3e-29 133.7 97 66.0
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.4e-26 122.9 78 78.2
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 2.3e-24 118.2 145 51.7
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.0e-24 117.9 80 70.0
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.5e-23 115.5 307 30.6
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 3.1e-21 107.8 84 63.1
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 5.4e-21 107.1 71 67.6
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 5.2e-16 90.5 82 58.5
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 7.5e-15 86.7 93 49.5
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 9.8e-15 86.3 89 51.7
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 3.3e-10 71.2 46 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.2e-09 69.3 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.2e-09 69.3 46 65.2


User provided reference genes

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