Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 2.7e-93 345.5 198 100.0
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 1.6e-77 293.1 198 82.3
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 2.3e-44 183.0 202 54.5
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 4.3e-43 178.7 194 55.7
QL10p005006 Quercus lobata HOM05D008121 ORTHO05D009878 5.3e-41 171.8 200 58.0
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 3.5e-32 142.5 199 47.2
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 3.2e-30 136.0 197 46.2
Prupe.5G156300 Prunus persica HOM05D008121 ORTHO05D009878 5.5e-30 135.2 218 44.0
FvH4_5g07590 Fragaria vesca HOM05D008121 ORTHO05D009878 7.5e-27 124.8 199 42.7
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 5.9e-24 115.2 164 46.3
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 7.7e-24 114.8 197 42.1
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 1.3e-23 114.0 202 42.6
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 2.2e-23 113.2 200 41.0
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 2.1e-21 106.7 200 42.5
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 2.7e-21 106.3 221 39.8
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 1.8e-20 103.6 195 41.0
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 3.4e-19 99.4 201 38.8
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 1.7e-18 97.1 196 41.3
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 2.2e-18 96.7 194 41.2
Sed0025515 Sechium edule HOM05D008121 ORTHO05D009878 5.4e-17 92.0 200 39.0
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 2.0e-16 90.1 196 42.3
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 3.5e-16 89.4 168 39.3
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 3.8e-15 85.9 176 42.0
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 6.5e-15 85.1 162 37.7
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 1.9e-14 83.6 212 41.5
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 2.5e-14 83.2 191 39.8
GSVIVG01007536001 Vitis vinifera HOM05D008121 ORTHO05D009878 2.7e-13 79.7 180 38.3
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 1.4e-12 77.4 171 35.1
CANSAT80G0868 Cannabis sativa HOM05D008121 ORTHO05D009878 2.3e-12 76.6 184 34.8
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 3.0e-12 76.3 194 35.1
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 5.2e-12 75.5 197 35.5
Lalb_Chr13g0297421 Lupinus albus HOM05D008121 ORTHO05D009878 1.2e-11 74.3 163 37.4
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 2.0e-11 73.6 148 36.5
Glyma.05G045100 Glycine max HOM05D008121 ORTHO05D009878 4.4e-11 72.4 179 35.8
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 4.4e-11 72.4 184 39.1
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 1.3e-10 70.9 171 36.3
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 1.7e-10 70.5 194 34.0
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 1.7e-10 70.5 184 39.1
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 2.2e-10 70.1 185 39.5
AT3G48490 Arabidopsis thaliana HOM05D011481 ORTHO05D009878 2.8e-10 69.7 148 36.5
Lj4g0024363 Lotus japonicus HOM05D008121 ORTHO05D009878 3.7e-10 69.3 154 39.6
Nitab4.5_0005327g0050 Nicotiana tabacum HOM05D008121 ORTHO05D009878 1.8e-09 67.0 185 35.1
Nitab4.5_0005418g0010 Nicotiana tabacum HOM05D008121 ORTHO05D009878 1.8e-09 67.0 197 34.0
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 2.4e-09 66.6 172 35.5
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 2.4e-09 66.6 170 31.8
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 5.4e-09 65.5 173 34.1
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 1.2e-08 64.3 185 34.6
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 4.5e-08 62.4 174 33.9
EL10Ac7g18085 Beta vulgaris HOM05D008121 ORTHO05D009878 4.5e-08 62.4 183 35.0
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 4.5e-08 62.4 154 33.8
PGR044G1447 Punica granatum HOM05D011481 ORTHO05D009878 7.7e-08 61.6 192 31.8
Sopen03g030170 Solanum pennellii HOM05D008121 ORTHO05D009878 1.0e-07 61.2 201 33.3
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 1.3e-07 60.8 172 33.7
arahy.Tifrunner.gnm1.ann1.YZZN9M Arachis hypogaea HOM05D008121 ORTHO05D009878 1.3e-07 60.8 174 33.9
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 1.3e-07 60.8 148 33.8
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 2.9e-07 59.7 163 36.2
Oeu018378.1 Olea europaea HOM05D008121 ORTHO05D009878 2.9e-07 59.7 158 33.5
Solyc03g110980.4 Solanum lycopersicum HOM05D008121 ORTHO05D009878 2.9e-07 59.7 195 33.3
Sp5g13540 Schrenkiella parvula HOM05D011481 ORTHO05D009878 5.0e-07 58.9 152 30.9
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 8.6e-07 58.2 148 33.1
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 8.6e-07 58.2 148 33.1
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 8.6e-07 58.2 62 53.2
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 8.6e-07 58.2 62 53.2
DCAR_026211 Daucus carota HOM05D008121 ORTHO05D009878 8.6e-07 58.2 170 34.1
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 1.1e-06 57.8 163 36.2
Psat4g064880 Pisum sativum HOM05D008121 ORTHO05D009878 1.1e-06 57.8 174 36.8
SGA_v2.0_scaffold161G37821 Striga asiatica HOM05D008121 ORTHO05D009878 1.1e-06 57.8 172 34.3
PGSC0003DMG400015199 Solanum tuberosum HOM05D008121 ORTHO05D009878 1.9e-06 57.0 195 32.3
TPR.G37567 Trifolium pratense HOM05D008121 ORTHO05D009878 1.9e-06 57.0 182 36.8
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 2.5e-06 56.6 165 32.1
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 2.5e-06 56.6 165 32.1
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 2.5e-06 56.6 165 32.1
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 2.5e-06 56.6 166 32.5
MD14G1163000 Malus domestica HOM05D008121 ORTHO05D009878 3.3e-06 56.2 32 84.4
Aa31LG4G17080 Aethionema arabicum HOM05D011481 ORTHO05D009878 4.3e-06 55.8 151 31.1
Ah.15g095290 Amaranthus hybridus HOM05D001185 ORTHO05D002551 5.6e-06 55.5 149 36.9
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 5.6e-06 55.5 177 32.8


User provided reference genes

Program Settings