Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.8e-93 345.9 178 100.0
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 1.3e-43 180.3 157 70.7
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 1.1e-42 177.2 157 68.8
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.2e-36 157.1 98 85.7
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 2.0e-31 139.8 159 56.6
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 3.4e-31 139.0 159 56.6
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 3.4e-31 139.0 101 74.3
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 7.6e-31 137.9 159 57.2
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 2.2e-30 136.3 157 54.8
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 8.5e-30 134.4 101 73.3
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.1e-29 134.0 101 76.2
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.4e-29 133.7 111 68.5
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 1.4e-29 133.7 157 58.6
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 4.2e-29 132.1 101 70.3
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 5.5e-29 131.7 101 75.2
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 7.2e-29 131.3 104 67.3
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 9.3e-29 131.0 111 68.5
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.6e-28 130.2 158 58.9
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.1e-28 129.8 101 74.3
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 4.6e-28 128.6 90 77.8
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 7.9e-28 127.9 104 66.3
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 7.9e-28 127.9 102 71.6
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.3e-27 127.1 116 62.1
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 2.3e-27 126.3 102 69.6
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 3.0e-27 125.9 161 52.8
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 3.0e-27 125.9 161 52.8
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 3.9e-27 125.6 95 72.6
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 3.9e-27 125.6 157 54.8
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 6.7e-27 124.8 93 73.1
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.5e-26 123.6 101 70.3
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 1.5e-26 123.6 120 61.7
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.5e-26 123.6 99 66.7
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 1.9e-26 123.2 110 68.2
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 2.5e-26 122.9 142 54.2
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 3.3e-26 122.5 101 70.3
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 3.3e-26 122.5 134 58.2
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 4.3e-26 122.1 159 50.9
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 4.3e-26 122.1 90 74.4
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 7.4e-26 121.3 90 73.3
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 7.4e-26 121.3 106 63.2
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 2.2e-25 119.8 161 51.6
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 2.2e-25 119.8 115 60.0
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 2.8e-25 119.4 119 58.8
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 4.8e-25 118.6 157 51.6
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 4.8e-25 118.6 101 67.3
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 4.8e-25 118.6 87 77.0
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 8.2e-25 117.9 104 67.3
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.4e-24 117.1 101 68.3
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 2.4e-24 116.3 103 64.1
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.1e-24 115.9 101 67.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.1e-24 115.5 104 67.3
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 9.1e-24 114.4 98 64.3
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 2.0e-23 113.2 101 63.4
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.6e-23 112.8 115 62.6
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 3.4e-23 112.5 96 65.6
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 3.4e-23 112.5 98 67.3
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 3.4e-23 112.5 121 56.2
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.5e-23 112.1 101 68.3
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.5e-23 112.1 87 77.0
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 5.9e-23 111.7 103 66.0
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 5.9e-23 111.7 160 51.2
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 1.0e-22 110.9 107 60.7
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 1.3e-22 110.5 94 66.0
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.3e-22 110.5 101 59.4
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 1.3e-22 110.5 144 52.8
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 1.7e-22 110.2 101 65.3
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 2.2e-22 109.8 101 61.4
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 2.2e-22 109.8 158 52.5
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.9e-22 109.4 89 69.7
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 3.8e-22 109.0 102 59.8
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 3.8e-22 109.0 102 59.8
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 3.8e-22 109.0 102 59.8
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 3.8e-22 109.0 95 63.2
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 5.0e-22 108.6 101 62.4
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 5.0e-22 108.6 157 50.3
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 6.5e-22 108.2 97 61.9
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 6.5e-22 108.2 94 67.0
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 1.1e-21 107.5 88 62.5
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 1.1e-21 107.5 101 59.4
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 1.1e-21 107.5 90 63.3
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.4e-21 107.1 158 48.7
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.4e-21 107.1 80 73.8
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 1.9e-21 106.7 121 54.5
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 2.5e-21 106.3 141 50.4
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.5e-21 106.3 76 75.0
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.2e-21 105.9 103 65.0
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 4.2e-21 105.5 103 56.3
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 4.2e-21 105.5 114 52.6
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 4.2e-21 105.5 103 63.1
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 5.5e-21 105.1 93 63.4
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 7.2e-21 104.8 94 62.8
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 9.4e-21 104.4 101 58.4
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 9.4e-21 104.4 117 53.0
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 1.2e-20 104.0 70 75.7
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.2e-20 104.0 89 66.3
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.2e-20 104.0 78 70.5
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.2e-20 104.0 78 70.5
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 1.6e-20 103.6 111 54.1
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.6e-20 103.6 79 69.6
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 2.1e-20 103.2 94 58.5
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 2.1e-20 103.2 103 58.3
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 2.7e-20 102.8 98 60.2
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 2.7e-20 102.8 158 48.7
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.7e-20 102.8 103 61.2
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 3.6e-20 102.4 64 81.2
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 6.1e-20 101.7 67 80.6
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.8e-19 100.1 112 54.5
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 3.0e-19 99.4 62 79.0
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 6.7e-19 98.2 103 57.3
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 6.7e-19 98.2 60 83.3
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 8.8e-19 97.8 79 68.4
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 8.8e-19 97.8 75 73.3
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 8.8e-19 97.8 62 75.8
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 8.8e-19 97.8 60 81.7
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.0e-18 96.7 59 83.1
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.0e-18 96.7 89 61.8
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 3.3e-18 95.9 91 62.6
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 5.7e-18 95.1 61 82.0
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 5.7e-18 95.1 59 83.1
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 7.4e-18 94.7 59 81.4
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 9.7e-18 94.4 60 83.3
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 1.3e-17 94.0 88 63.6
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 1.3e-17 94.0 62 74.2
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 2.2e-17 93.2 94 58.5
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 3.7e-17 92.4 61 78.7
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 3.7e-17 92.4 131 51.1
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 3.7e-17 92.4 61 80.3
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 3.1e-16 89.4 86 64.0
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 5.3e-16 88.6 92 52.2
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 1.4e-13 80.5 63 71.4
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 4.2e-13 79.0 83 54.2
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 5.5e-13 78.6 77 59.7
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 1.6e-12 77.0 76 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 8.0e-12 74.7 60 61.7
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.8e-11 73.6 61 67.2
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.0e-11 72.8 83 48.2
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 6.7e-11 71.6 77 50.6
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.5e-10 70.5 77 50.6
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.5e-10 70.5 108 44.4
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 4.4e-10 68.9 77 50.6
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 5.7e-10 68.6 60 56.7
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 3.1e-08 62.8 71 57.7
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 5.3e-08 62.0 47 70.2
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 7.0e-08 61.6 125 44.8
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 1.6e-07 60.5 60 53.3
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.6e-07 60.5 48 68.8
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 4.5e-07 58.9 54 68.5
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 1.3e-06 57.4 60 55.0
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 1.3e-06 57.4 34 82.4
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 3.8e-06 55.8 43 65.1
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 5.0e-06 55.5 30 86.7


User provided reference genes

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