Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1466.4 758 100.0
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1436.0 758 97.6
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1320.1 758 89.2
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1277.3 774 85.4
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1237.2 749 83.3
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1216.4 758 82.1
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1199.1 758 80.2
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1196.0 758 81.0
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1193.7 760 81.3
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1192.2 758 79.8
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1190.3 747 80.9
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1189.9 758 79.8
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1189.5 750 81.5
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1188.7 758 81.4
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1187.9 755 80.5
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1184.1 758 79.0
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1183.7 758 80.2
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1181.4 758 79.9
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1181.4 758 79.8
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1180.6 758 79.6
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1180.2 766 78.5
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1178.7 774 78.9
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1178.7 746 81.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1177.5 755 79.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1176.8 760 79.9
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1176.0 774 78.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1174.8 755 79.3
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1172.1 749 80.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1171.0 749 79.7
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1169.8 749 79.8
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1169.1 763 79.4
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1168.7 754 78.9
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1167.1 772 77.3
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1166.8 758 79.0
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1164.1 758 78.5
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1162.1 749 80.5
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1160.2 755 78.7
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1155.6 757 77.8
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1154.0 758 78.4
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1149.4 749 78.1
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1146.0 763 76.5
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1142.5 760 77.8
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1142.5 760 76.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1141.3 758 77.4
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1141.3 758 77.2
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1140.6 758 78.2
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1135.6 758 77.2
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1134.8 801 74.3
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 0.0e+00 1129.0 743 77.1
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1127.5 758 77.2
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 0.0e+00 1125.2 759 77.9
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 0.0e+00 1105.1 758 75.7
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 0.0e+00 1104.7 753 74.1
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 0.0e+00 1097.4 754 72.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 0.0e+00 1094.3 749 75.2
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 0.0e+00 1094.3 755 73.2
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 0.0e+00 1093.6 766 73.4
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 0.0e+00 1086.6 752 73.3
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1082.0 760 73.8
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 0.0e+00 1079.3 708 78.1
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 7.8e-311 1070.1 758 73.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 2.5e-309 1065.1 760 72.6
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 759 72.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.2e-308 1062.0 753 71.8
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.1e-307 1059.7 762 71.1
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.5e-306 1055.8 755 72.7
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.0e-306 1055.4 758 70.2
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.6e-306 1055.0 757 72.9
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 3.4e-306 1054.7 756 71.3
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.0e-305 1050.8 758 70.1
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 7.9e-303 1043.5 783 69.9
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.5e-301 1038.5 754 71.4
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 3.3e-301 1038.1 754 70.7
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.3e-300 1036.2 758 70.7
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.7e-300 1035.8 754 70.6
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.7e-300 1035.8 750 71.3
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 6.3e-300 1033.9 753 70.1
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 8.2e-300 1033.5 762 69.8
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 8.2e-300 1033.5 762 69.8
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.1e-299 1033.1 775 71.6
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-299 1032.7 760 70.0
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.4e-299 1032.7 760 70.0
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 3.1e-299 1031.6 761 70.4
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 3.1e-299 1031.6 761 70.4
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 8.5e-297 1023.5 756 70.2
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 4.2e-296 1021.1 761 70.2
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 4.2e-296 1021.1 761 70.2
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.6e-295 1018.1 746 71.3
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 6.1e-295 1017.3 688 75.9
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.3e-294 1015.4 756 69.6
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 2.3e-294 1015.4 749 69.0
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.4e-293 1011.1 749 69.3
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.3e-289 999.6 755 69.7
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 3.6e-287 991.5 636 78.9
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 5.9e-282 974.2 751 67.9
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.8e-278 962.6 758 66.5
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 3.7e-276 954.9 736 67.7
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.7e-276 954.9 757 65.9
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 7.7e-274 947.2 709 70.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.3e-265 919.8 659 70.4
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 8.9e-262 907.1 762 62.3
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 2.8e-260 902.1 813 60.5
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 6.3e-260 901.0 762 61.2
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.4e-259 899.8 749 62.6
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 7.0e-259 897.5 757 62.7
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.0e-257 893.6 757 62.9
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.3e-257 893.3 651 72.2
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.9e-256 889.4 758 62.5
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.9e-256 889.4 758 62.5
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 7.8e-250 867.5 728 63.5
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 4.0e-246 855.1 528 83.1
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.1e-234 816.2 528 78.6
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.8e-230 803.1 753 56.3
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 9.9e-229 797.3 536 75.4
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.7e-228 796.6 759 57.2
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.5e-226 788.9 721 59.8
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 5.8e-213 745.0 533 71.7
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 6.4e-212 741.5 751 52.2
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 7.9e-210 734.6 752 53.6
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.5e-208 729.6 742 53.4
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 5.3e-206 721.8 559 67.6
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.5e-188 661.8 739 49.5
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.4e-185 654.1 749 51.0
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 6.5e-172 608.6 381 81.6
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.5e-155 553.5 624 49.4
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 4.4e-144 516.2 345 76.5
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 9.2e-142 508.4 390 67.2
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 6.4e-127 459.1 472 57.0
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 3.0e-116 423.7 734 36.9
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.3e-92 344.4 227 78.0
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.8e-89 334.7 753 30.1
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.1e-81 307.4 532 40.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.6e-80 304.3 833 29.7
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.6e-77 295.0 224 69.2
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.9e-55 221.1 223 55.6
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 7.2e-46 189.9 204 53.9
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 3.6e-45 187.6 120 76.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.5e-38 164.9 136 66.2
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 9.5e-38 162.9 151 57.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.8e-33 148.7 102 71.6
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 3.1e-33 147.9 113 67.3
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.3e-30 137.9 91 73.6
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 5.6e-30 137.1 218 44.5
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 7.3e-30 136.7 235 41.7
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 1.2e-27 129.4 235 39.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 7.0e-25 120.2 115 53.9
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.8e-24 116.7 80 70.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.2e-21 109.4 91 63.7
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.4e-19 101.3 75 68.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.4e-17 95.9 98 49.0
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.6e-16 92.4 56 85.7
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.0e-15 89.7 96 44.8
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 2.5e-14 85.1 111 45.0
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 4.3e-14 84.3 79 59.5
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 2.1e-13 82.0 103 52.4
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 3.1e-12 78.2 101 47.5
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.8e-11 73.9 65 58.5
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 9.9e-11 73.2 127 36.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 6.4e-10 70.5 73 50.7
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 4.1e-09 67.8 73 49.3
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 1.6e-08 65.9 55 61.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.3e-07 62.8 84 42.9


User provided reference genes

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