Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018830 Carpinus fangiana HOM05D002071 ORTHO05D002109 3.7e-51 204.5 98 100.0
Cfa019415 Carpinus fangiana HOM05D002071 ORTHO05D002109 7.2e-15 84.0 66 69.7
Haze_07837 Corylus avellana HOM05D002071 ORTHO05D004759 1.6e-14 82.8 66 68.2
CANSAT80G1043 Cannabis sativa HOM05D002071 ORTHO05D002109 7.5e-12 73.9 48 79.2
CSS0010808 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 3.7e-11 71.6 64 60.9
Atru.chr1.188 Acer truncatum HOM05D002071 ORTHO05D002109 8.3e-11 70.5 48 72.9
Dinv19606 Davidia involucrata HOM05D000604 ORTHO05D000990 1.4e-10 69.7 83 50.6
CiPaw.11G065000 Carya illinoinensis HOM05D002071 ORTHO05D002109 2.4e-10 68.9 48 72.9
QL04p077077 Quercus lobata HOM05D002071 ORTHO05D002109 2.4e-10 68.9 48 68.8
ClCG02G018560 Citrullus lanatus HOM05D002071 ORTHO05D002109 3.1e-10 68.6 48 72.9
Sc20g0002830 Simmondsia chinensis HOM05D002071 ORTHO05D002109 3.1e-10 68.6 48 70.8
TWI38G0753 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 3.1e-10 68.6 48 72.9
Cpa.g.sc331.4 Carica papaya HOM05D002071 ORTHO05D002109 4.1e-10 68.2 50 70.0
THA.LOC104816069 Tarenaya hassleriana HOM05D002071 ORTHO05D002109 4.1e-10 68.2 50 72.0
vmacro09777 Vaccinium macrocarpon HOM05D002071 ORTHO05D002109 4.1e-10 68.2 62 59.7
GSVIVG01020284001 Vitis vinifera HOM05D002071 ORTHO05D002109 4.1e-10 68.2 48 70.8
Ciclev10005358m.g Citrus clementina HOM05D002071 ORTHO05D002109 5.4e-10 67.8 50 70.0
Rhsim04G0005400 Rhododendron simsii HOM05D002071 ORTHO05D002109 5.4e-10 67.8 50 68.0
SGA_v2.0_scaffold7G03596 Striga asiatica HOM05D002071 ORTHO05D002109 5.4e-10 67.8 50 70.0
Carub.0001s4468 Capsella rubella HOM05D002071 ORTHO05D002109 7.0e-10 67.4 48 72.9
Duzib213G0850 Durio zibethinus HOM05D002071 ORTHO05D002109 7.0e-10 67.4 48 68.8
Hma1.2p1_0637F.1_g193390 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 7.0e-10 67.4 48 68.8
Manes.06G173700 Manihot esculenta HOM05D002071 ORTHO05D002109 7.0e-10 67.4 48 68.8
AT1G56080 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 1.2e-09 66.6 52 69.2
Cc05_g16230 Coffea canephora HOM05D002071 ORTHO05D002109 1.2e-09 66.6 50 66.0
Hma1.2p1_0151F.1_g067560 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 1.2e-09 66.6 48 68.8
CSS0016057 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 2.0e-09 65.9 50 68.0
CSS0048525 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 2.0e-09 65.9 50 68.0
Eucgr.F04426 Eucalyptus grandis HOM05D002071 ORTHO05D002109 2.0e-09 65.9 48 68.8
Lj1A907T21 Lonicera japonica HOM05D002071 ORTHO05D002109 2.0e-09 65.9 48 68.8
Sabra05G0079900 Salix brachista HOM05D002071 ORTHO05D002109 2.0e-09 65.9 48 68.8
Thecc.07G160300 Theobroma cacao HOM05D002071 ORTHO05D002109 2.0e-09 65.9 48 66.7
CARHR045800 Cardamine hirsuta HOM05D002071 ORTHO05D002109 2.7e-09 65.5 50 70.0
Hund12438 Selenicereus undatus HOM05D002071 ORTHO05D002109 2.7e-09 65.5 50 66.0
AL1G64330 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 3.5e-09 65.1 50 70.0
Migut.M01546 Erythranthe guttata HOM05D002071 ORTHO05D002109 3.5e-09 65.1 50 68.0
Gohir.A11G291700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 3.5e-09 65.1 48 64.6
Gohir.D11G300500 Gossypium hirsutum HOM05D002071 ORTHO05D002109 3.5e-09 65.1 48 64.6
Gorai.007G336300 Gossypium raimondii HOM05D002071 ORTHO05D002109 3.5e-09 65.1 48 64.6
HanXRQChr11g0335051 Helianthus annuus HOM05D002071 ORTHO05D002109 3.5e-09 65.1 48 66.7
MD05G1222300 Malus domestica HOM05D002071 ORTHO05D002109 3.5e-09 65.1 48 68.8
MD10G1203900 Malus domestica HOM05D002071 ORTHO05D002109 3.5e-09 65.1 48 68.8
SalBow8G1388 Salvia bowleyana HOM05D002071 ORTHO05D002109 3.5e-09 65.1 50 66.0
Actinidia12779 Actinidia chinensis HOM05D002071 ORTHO05D002109 4.5e-09 64.7 48 66.7
ATR0763G240 Amborella trichopoda HOM05D002071 ORTHO05D002109 4.5e-09 64.7 48 68.8
MBI05_g09168_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 4.5e-09 64.7 52 61.5
Peaxi162Scf00452g00621 Petunia axillaris HOM05D002071 ORTHO05D002109 4.5e-09 64.7 66 54.5
Potri.005G097600 Populus trichocarpa HOM05D002071 ORTHO05D002109 4.5e-09 64.7 48 66.7
Actinidia37119 Actinidia chinensis HOM05D002071 ORTHO05D002109 5.9e-09 64.3 48 66.7
Dinv42502 Davidia involucrata HOM05D002071 ORTHO05D002109 5.9e-09 64.3 48 64.6
Thhalv10011668m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 5.9e-09 64.3 50 68.0
Nn7g37944 Nelumbo nucifera HOM05D002071 ORTHO05D002109 5.9e-09 64.3 50 66.0
Phvul.011G174200 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 5.9e-09 64.3 48 68.8
Potri.007G066900 Populus trichocarpa HOM05D002071 ORTHO05D002109 5.9e-09 64.3 48 66.7
Sed0010908 Sechium edule HOM05D002071 ORTHO05D002109 5.9e-09 64.3 48 70.8
TWI39G1254 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 5.9e-09 64.3 48 66.7
TAR629G2653 Trochodendron aralioides HOM05D002071 ORTHO05D002109 5.9e-09 64.3 48 66.7
arahy.Tifrunner.gnm1.ann1.WXZ4D6 Arachis hypogaea HOM05D002071 ORTHO05D002109 7.7e-09 63.9 50 66.0
MELO3C019653.2 Cucumis melo HOM05D002071 ORTHO05D002109 7.7e-09 63.9 48 68.8
CsaV3_6G013640 Cucumis sativus L. HOM05D002071 ORTHO05D002109 7.7e-09 63.9 48 68.8
Prupe.4G138000 Prunus persica HOM05D002071 ORTHO05D002109 7.7e-09 63.9 50 66.0
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 1.0e-08 63.5 48 68.8
BcaB07g33171 Brassica carinata HOM05D002071 ORTHO05D002109 1.0e-08 63.5 48 68.8
BcaC08g43675 Brassica carinata HOM05D002071 ORTHO05D002109 1.0e-08 63.5 50 68.0
C06p10940 Brassica napus HOM05D005640 ORTHO05D007124 1.0e-08 63.5 50 68.0
BolC6t36176H Brassica oleracea HOM05D002071 ORTHO05D002109 1.0e-08 63.5 50 68.0
Ca_27015_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 1.0e-08 63.5 50 68.0
PSO675G2413 Papaver somniferum HOM05D002071 ORTHO05D002109 1.0e-08 63.5 50 66.0
PSO675G7748 Papaver somniferum HOM05D002071 ORTHO05D002109 1.0e-08 63.5 50 66.0
SGA_v2.0_scaffold1110G53845 Striga asiatica HOM05D002071 ORTHO05D002109 1.0e-08 63.5 50 66.0
SGA_v2.0_scaffold186G40210 Striga asiatica HOM05D005437 ORTHO05D006699 1.0e-08 63.5 50 66.0
COL.COLO4_38371 Corchorus olitorius HOM05D002071 ORTHO05D002109 1.3e-08 63.2 48 64.6
Manes.14G011805 Manihot esculenta HOM05D002071 ORTHO05D002109 1.3e-08 63.2 48 66.7
Medtr0260s0030 Medicago truncatula HOM05D002071 ORTHO05D002109 1.3e-08 63.2 48 68.8
RcHm_v2.0_Chr5g0026171 Rosa chinensis HOM05D002071 ORTHO05D002109 1.3e-08 63.2 48 66.7
arahy.Tifrunner.gnm1.ann1.L1XN9H Arachis hypogaea HOM05D002071 ORTHO05D002109 1.7e-08 62.8 50 64.0
Glyma.08G236200 Glycine max HOM05D002071 ORTHO05D002109 1.7e-08 62.8 48 66.7
Glyma.15G212200 Glycine max HOM05D002071 ORTHO05D002109 1.7e-08 62.8 48 66.7
Lj3g0001439 Lotus japonicus HOM05D002071 ORTHO05D002109 1.7e-08 62.8 50 66.0
Nitab4.5_0000611g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.7e-08 62.8 48 62.5
Nitab4.5_0002321g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.7e-08 62.8 48 62.5
Nitab4.5_0008429g0020 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.7e-08 62.8 48 62.5
Psat4g141000 Pisum sativum HOM05D002071 ORTHO05D002109 1.7e-08 62.8 66 54.5
unitig_748.g7632 Utricularia gibba HOM05D002071 ORTHO05D002109 1.7e-08 62.8 48 64.6
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 2.2e-08 62.4 48 64.6
Aqoxy4G00030 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 2.2e-08 62.4 48 64.6
BraSC56t46386Z Brassica rapa HOM05D002071 ORTHO05D002109 2.2e-08 62.4 50 66.0
CAN.G943.44 Capsicum annuum HOM05D002071 ORTHO05D002109 2.2e-08 62.4 72 51.4
Lsat_1_v5_gn_7_111701 Lactuca sativa HOM05D002071 ORTHO05D002109 2.2e-08 62.4 48 64.6
Sed0026955 Sechium edule HOM05D002071 ORTHO05D002109 2.2e-08 62.4 48 68.8
Solyc10g005580.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 2.2e-08 62.4 48 64.6
Sopen10g001550 Solanum pennellii HOM05D002071 ORTHO05D002109 2.2e-08 62.4 48 64.6
PGSC0003DMG400011241 Solanum tuberosum HOM05D002071 ORTHO05D002109 2.2e-08 62.4 48 64.6
FvH4_3g15540 Fragaria vesca HOM05D002071 ORTHO05D002109 2.9e-08 62.0 48 66.7
FAN11G0694 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.9e-08 62.0 48 66.7
FAN16G0661 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.9e-08 62.0 48 66.7
FAN21G0659 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.9e-08 62.0 48 66.7
FAN25G0138 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.9e-08 62.0 48 66.7
Nitab4.5_0002633g0030 Nicotiana tabacum HOM05D002071 ORTHO05D002109 2.9e-08 62.0 48 60.4
ECA236G3752 Erigeron canadensis HOM05D002071 ORTHO05D002109 3.8e-08 61.6 48 66.7
Lalb_Chr03g0031741 Lupinus albus HOM05D002071 ORTHO05D002109 3.8e-08 61.6 50 64.0
Actinidia07364 Actinidia chinensis HOM05D002071 ORTHO05D002109 5.0e-08 61.2 48 64.6
Ah.16g106480 Amaranthus hybridus HOM05D002071 ORTHO05D002109 5.0e-08 61.2 48 62.5
MSTRG.16107 Avicennia marina HOM05D002071 ORTHO05D002109 5.0e-08 61.2 50 62.0
EL10Ac2g03284 Beta vulgaris HOM05D002071 ORTHO05D002109 5.0e-08 61.2 50 58.0
MSTRG.13072 Avicennia marina HOM05D002071 ORTHO05D002109 6.5e-08 60.8 50 62.0
Os04g0616000 Oryza sativa ssp. japonica HOM05D002071 ORTHO05D002109 6.5e-08 60.8 48 62.5
Zm00001eb430930 Zea mays HOM05D002071 ORTHO05D002109 6.5e-08 60.8 48 62.5
Sopen07g034680 Solanum pennellii HOM05D002071 ORTHO05D002109 8.5e-08 60.5 50 64.0
BolC5t30198H Brassica oleracea HOM05D002071 ORTHO05D002109 1.1e-07 60.1 62 50.0
AUR62040864 Chenopodium quinoa HOM05D002071 ORTHO05D002109 1.1e-07 60.1 48 60.4
DCAR_030853 Daucus carota HOM05D002071 ORTHO05D002109 1.1e-07 60.1 48 64.6
Sp1g41700 Schrenkiella parvula HOM05D002071 ORTHO05D002109 1.1e-07 60.1 50 64.0
Carub.0001s1628 Capsella rubella HOM05D002071 ORTHO05D002109 1.5e-07 59.7 48 58.3
CARHR017000 Cardamine hirsuta HOM05D002071 ORTHO05D002109 1.5e-07 59.7 48 58.3
AUR62026897 Chenopodium quinoa HOM05D002071 ORTHO05D002109 1.5e-07 59.7 48 60.4
Lalb_Chr19g0133321 Lupinus albus HOM05D002071 ORTHO05D002109 1.5e-07 59.7 50 62.0
Sp5g34190 Schrenkiella parvula HOM05D002071 ORTHO05D002109 1.5e-07 59.7 48 60.4
HPP92_000948 Vanilla planifolia HOM05D002071 ORTHO05D002109 1.5e-07 59.7 48 62.5
AL1G28690 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 1.9e-07 59.3 48 58.3
BcaC05g25558 Brassica carinata HOM05D002071 ORTHO05D002109 1.9e-07 59.3 52 55.8
SEGI_20222 Sequoiadendron giganteum HOM05D002071 ORTHO05D002109 1.9e-07 59.3 48 62.5
SEGI_31224 Sequoiadendron giganteum HOM05D002071 ORTHO05D002109 1.9e-07 59.3 55 52.7
THA.LOC104808126 Tarenaya hassleriana HOM05D002071 ORTHO05D002109 1.9e-07 59.3 52 57.7
MSTRG.7066 Avicennia marina HOM05D002071 ORTHO05D002109 2.5e-07 58.9 48 60.4
Migut.H01684 Erythranthe guttata HOM05D002071 ORTHO05D002109 2.5e-07 58.9 50 60.0
Gorai.002G104700 Gossypium raimondii HOM05D002071 ORTHO05D002109 2.5e-07 58.9 48 60.4
MBI18_g37407_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 2.5e-07 58.9 48 60.4
TAR626G1582 Trochodendron aralioides HOM05D002071 ORTHO05D002109 2.5e-07 58.9 48 62.5
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 3.2e-07 58.5 48 58.3
Oeu051671.4 Olea europaea HOM05D002071 ORTHO05D002109 3.2e-07 58.5 46 63.0
Sp1g14690 Schrenkiella parvula HOM05D002071 ORTHO05D002109 3.2e-07 58.5 48 56.2
Solyc07g066520.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 3.2e-07 58.5 50 62.0
BcaB02g06637 Brassica carinata HOM05D002071 ORTHO05D002109 4.2e-07 58.2 48 58.3
A06p12520 Brassica napus HOM05D002071 ORTHO05D002109 4.2e-07 58.2 48 58.3
C05p14780 Brassica napus HOM05D002071 ORTHO05D002109 4.2e-07 58.2 48 58.3
BraA06t24415Z Brassica rapa HOM05D002071 ORTHO05D002109 4.2e-07 58.2 48 58.3
Gohir.D01G080000 Gossypium hirsutum HOM05D002071 ORTHO05D002109 4.2e-07 58.2 48 60.4
Actinidia35428 Actinidia chinensis HOM05D002071 ORTHO05D002109 5.5e-07 57.8 37 78.4
Lalb_Chr01g0007141 Lupinus albus HOM05D002071 ORTHO05D002109 5.5e-07 57.8 50 62.0
PGSC0003DMG400022123 Solanum tuberosum HOM05D002071 ORTHO05D002109 7.2e-07 57.4 48 60.4
SGA_v2.0_scaffold239G44048 Striga asiatica HOM05D002071 ORTHO05D002109 7.2e-07 57.4 48 58.3
Thhalv10008187m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 9.4e-07 57.0 48 54.2
Zm00001eb070750 Zea mays HOM05D002071 ORTHO05D002109 9.4e-07 57.0 48 58.3
AT1G16520 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 1.2e-06 56.6 48 56.2
CDE02G1266 Ceratophyllum demersum HOM05D002071 ORTHO05D002109 1.6e-06 56.2 46 60.9
Cc07_g21200 Coffea canephora HOM05D002071 ORTHO05D002109 2.1e-06 55.8 87 36.8
Aa31LG7G1070 Aethionema arabicum HOM05D002071 ORTHO05D002109 2.7e-06 55.5 48 52.1
AagrBONN_evm.TU.Sc2ySwM_368.2105 Anthoceros agrestis HOM05D002071 ORTHO05D002109 2.7e-06 55.5 48 56.2
Pp3c25_7100 Physcomitrium patens HOM05D002071 ORTHO05D002109 6.1e-06 54.3 50 50.0
Mapoly0179s0016 Marchantia polymorpha HOM05D002071 ORTHO05D002109 8.0e-06 53.9 47 53.2


User provided reference genes

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