Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 1.5e-234 815.8 426 100.0
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 2.6e-210 735.3 491 82.3
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 2.8e-204 715.3 426 85.7
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 3.2e-192 675.2 425 83.8
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 7.1e-192 674.1 426 76.8
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.4e-184 649.8 427 74.9
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.2e-183 646.7 426 76.5
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.0e-182 642.1 426 77.0
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 2.5e-181 639.0 426 74.4
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 4.3e-181 638.3 427 77.5
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 7.4e-181 637.5 424 74.1
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 7.4e-181 637.5 424 74.5
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.6e-180 636.3 430 72.1
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.7e-180 635.2 428 73.8
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.4e-179 632.5 428 73.4
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 2.4e-179 632.5 426 79.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 6.9e-179 630.9 428 73.4
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.2e-178 630.2 426 72.8
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 3.4e-178 628.6 427 73.3
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.2e-177 625.9 426 72.8
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 2.9e-177 625.5 424 71.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 7.1e-176 620.9 430 71.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 9.3e-176 620.5 428 72.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 2.7e-175 619.0 426 72.3
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 3.5e-175 618.6 430 70.7
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 4.6e-175 618.2 427 74.0
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 6.0e-175 617.8 426 73.0
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 7.9e-175 617.5 428 70.8
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.0e-174 617.1 389 77.4
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 5.1e-174 614.8 435 69.9
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 5.1e-174 614.8 435 69.9
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 6.7e-174 614.4 428 74.8
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 8.7e-174 614.0 424 75.9
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 2.5e-173 612.5 426 70.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.3e-173 611.7 424 75.5
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.6e-172 609.8 435 69.2
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.6e-172 609.8 426 70.7
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.4e-171 606.7 426 70.7
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.4e-171 606.7 427 70.3
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 3.1e-171 605.5 426 68.5
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 4.0e-171 605.1 430 74.2
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 6.9e-171 604.4 426 68.5
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 3.4e-170 602.1 426 70.9
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 3.4e-170 602.1 434 74.9
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 5.8e-170 601.3 426 70.0
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 5.5e-168 594.7 425 69.9
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 5.5e-168 594.7 426 69.2
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 4.6e-167 591.7 423 67.8
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 7.9e-167 590.9 426 68.8
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.3e-166 589.3 434 67.3
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 5.1e-166 588.2 427 67.4
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 8.7e-166 587.4 427 71.0
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 4.3e-165 585.1 426 67.1
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.6e-164 583.2 423 66.4
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.2e-164 582.8 443 71.1
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 3.7e-164 582.0 424 66.7
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 3.7e-164 582.0 426 68.3
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 8.2e-164 580.9 423 66.2
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.4e-163 580.1 424 66.5
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.1e-163 578.9 387 76.5
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 3.1e-163 578.9 424 66.5
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 5.3e-163 578.2 454 68.5
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.3e-163 578.2 457 64.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 6.9e-163 577.8 429 67.4
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 9.0e-163 577.4 424 66.3
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 2.6e-162 575.9 429 67.1
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 5.9e-162 574.7 421 65.3
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 5.9e-162 574.7 409 67.2
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 6.5e-161 571.2 340 80.6
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 8.5e-161 570.9 437 70.3
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.1e-160 570.5 420 68.6
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.9e-160 569.7 424 68.2
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 4.2e-160 568.5 427 71.9
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.2e-159 567.0 426 68.5
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 2.1e-159 566.2 420 70.2
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 8.8e-158 560.8 420 66.0
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.1e-157 560.5 425 67.1
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 9.7e-157 557.4 433 63.3
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.3e-156 554.7 416 68.3
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 4.1e-155 552.0 479 60.5
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 5.3e-155 551.6 390 68.7
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 6.9e-155 551.2 416 68.3
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.0e-154 549.7 393 70.7
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.6e-154 549.3 416 68.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 8.5e-153 544.3 424 63.7
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.3e-149 532.3 448 62.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.4e-149 531.9 458 60.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 5.7e-149 531.6 413 63.0
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 9.7e-149 530.8 431 61.9
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.7e-146 521.2 333 75.4
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 4.2e-144 515.4 390 66.2
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.6e-143 513.5 319 75.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 4.8e-140 501.9 424 62.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 4.8e-140 501.9 416 62.0
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 3.8e-137 492.3 299 76.9
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.5e-136 488.4 302 75.5
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 8.8e-134 481.1 339 67.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.2e-133 480.7 310 74.8
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 7.5e-133 478.0 302 75.5
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.8e-131 473.4 424 62.0
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 2.1e-127 459.9 423 56.7
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 7.5e-125 451.4 343 65.3
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.1e-123 447.6 327 67.3
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.4e-123 447.2 437 59.5
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 3.8e-121 439.1 422 51.2
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 3.0e-118 429.5 427 50.1
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 4.4e-117 425.6 411 51.6
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.2e-116 423.3 426 51.9
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-104 384.0 321 59.8
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 6.4e-100 368.6 278 66.2
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 9.2e-99 364.8 316 56.0
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.5e-96 356.7 303 58.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.6e-87 327.4 276 69.2
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.9e-76 289.3 183 67.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 3.6e-71 273.1 360 40.0
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 7.1e-67 258.8 374 41.2
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 8.7e-65 251.9 217 53.9
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 5.1e-57 226.1 416 35.3
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.1e-56 224.9 581 29.9
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 6.1e-50 202.6 252 47.2
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.1e-46 190.3 129 73.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 5.3e-46 189.5 202 49.5
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.0e-44 185.3 119 76.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 6.5e-44 182.6 116 73.3
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 3.9e-41 173.3 117 72.6
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.6e-26 123.6 124 55.6
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.1e-22 112.1 146 45.9
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.4e-22 111.7 111 49.5
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 2.0e-21 107.8 256 35.2
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.7e-15 87.0 60 70.0
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.7e-10 70.1 62 59.7
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 3.4e-08 63.9 66 54.5
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 1.1e-06 58.9 110 36.4


User provided reference genes

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