Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.2e-40 167.5 83 100.0
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.2e-40 167.5 83 100.0
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.9e-30 134.4 88 80.7
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.7e-20 101.3 57 91.2
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.4e-19 99.4 57 89.5
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 4.1e-19 97.8 57 87.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 5.9e-18 94.0 57 84.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.2e-17 92.0 57 82.5
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.5e-16 89.4 68 67.6
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 7.2e-16 87.0 57 75.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 7.2e-16 87.0 57 75.4
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 9.4e-16 86.7 57 77.2
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 3.6e-15 84.7 57 71.9
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 4.7e-15 84.3 57 73.7
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 8.0e-15 83.6 57 71.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 8.0e-15 83.6 57 73.7
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.8e-14 82.4 49 85.7
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.0e-14 81.6 57 73.7
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 5.2e-14 80.9 57 75.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.2e-14 80.9 57 73.7
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.2e-14 80.9 57 73.7
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 6.8e-14 80.5 57 70.2
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 6.8e-14 80.5 57 68.4
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 8.8e-14 80.1 57 70.2
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 8.8e-14 80.1 57 75.4
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.2e-13 79.7 57 68.4
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.2e-13 79.7 57 73.7
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 3.4e-13 78.2 57 70.2
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 3.4e-13 78.2 60 73.3
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.4e-13 77.8 58 65.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 5.7e-13 77.4 57 75.4
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 7.5e-13 77.0 57 70.2
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 9.8e-13 76.6 76 50.0
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.2e-12 75.5 57 63.2
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.2e-12 75.5 57 73.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.2e-12 75.5 57 73.7
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.7e-12 74.7 57 63.2
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 4.8e-12 74.3 57 63.2
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.8e-12 74.3 62 66.1
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 6.3e-12 73.9 56 69.6
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.3e-12 73.9 57 63.2
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 6.3e-12 73.9 57 63.2
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 8.3e-12 73.6 58 74.1
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.1e-11 73.2 57 61.4
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.1e-11 73.2 57 68.4
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.1e-11 73.2 56 69.6
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.1e-11 73.2 56 69.6
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.1e-11 73.2 56 69.6
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.1e-11 73.2 56 69.6
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.4e-11 72.8 57 61.4
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.8e-11 72.4 58 72.4
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-11 72.4 58 72.4
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-11 72.4 58 72.4
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.4e-11 72.0 56 67.9
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.4e-11 72.0 56 67.9
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 3.1e-11 71.6 57 68.4
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.1e-11 71.6 58 65.5
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.1e-11 71.2 58 62.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.1e-11 71.2 57 63.2
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.4e-11 70.9 58 62.1
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.4e-11 70.9 58 62.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 5.4e-11 70.9 53 71.7
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.4e-11 70.9 56 67.9
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.0e-11 70.5 58 62.1
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 7.0e-11 70.5 57 64.9
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 7.0e-11 70.5 58 63.8
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 7.0e-11 70.5 59 66.1
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.1e-11 70.1 57 61.4
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 9.1e-11 70.1 56 60.7
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.2e-10 69.7 57 64.9
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.6e-10 69.3 57 61.4
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.6e-10 69.3 57 61.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.0e-10 68.9 57 68.4
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.0e-10 68.9 57 61.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.0e-10 68.9 58 69.0
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 2.0e-10 68.9 59 59.3
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 2.7e-10 68.6 57 68.4
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.5e-10 68.2 58 63.8
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 4.5e-10 67.8 57 64.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.5e-10 67.8 57 64.9
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 4.5e-10 67.8 65 66.2
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 7.7e-10 67.0 58 62.1
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.0e-09 66.6 58 69.0
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.3e-09 66.2 57 61.4
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.7e-09 65.9 58 67.2
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.7e-09 65.9 58 60.3
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.7e-09 65.9 57 61.4
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 3.8e-09 64.7 71 56.3
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 3.8e-09 64.7 57 63.2
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 5.0e-09 64.3 52 67.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 8.5e-09 63.5 58 65.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 8.5e-09 63.5 58 65.5
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 8.5e-09 63.5 71 56.3
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.5e-09 63.5 58 63.8
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.5e-08 62.8 52 65.4
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.5e-08 62.8 57 61.4
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.5e-08 62.0 73 49.3
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.5e-08 62.0 57 57.9
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.5e-08 62.0 57 57.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.5e-08 62.0 65 55.4
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.2e-08 61.6 59 61.0
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 4.2e-08 61.2 58 56.9
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.5e-08 60.8 57 57.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 7.2e-08 60.5 58 63.8
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 9.4e-08 60.1 58 55.2
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-07 59.7 57 59.6
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-07 59.7 56 62.5
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.6e-07 59.3 58 55.2
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.6e-07 59.3 58 55.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 3.6e-07 58.2 55 60.0
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.6e-07 58.2 55 60.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 4.7e-07 57.8 58 53.4
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 6.1e-07 57.4 60 50.0
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 6.1e-07 57.4 58 51.7
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.1e-07 57.4 58 53.4
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.0e-06 56.6 59 50.8
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.0e-06 56.6 57 57.9
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.4e-06 56.2 57 59.6
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.3e-06 55.5 58 53.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.3e-06 55.5 58 53.4
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.0e-06 55.1 59 50.8
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 5.2e-06 54.3 59 50.8
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 5.2e-06 54.3 59 50.8


User provided reference genes

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