Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 1.2e-126 456.4 224 100.0
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 2.6e-116 422.2 211 98.1
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 1.8e-98 362.8 208 86.1
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 2.6e-92 342.4 211 83.9
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 3.2e-74 282.3 216 69.9
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 8.6e-72 274.2 193 69.4
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 4.7e-70 268.5 179 73.7
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 2.6e-68 262.7 204 64.2
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 5.8e-68 261.5 198 67.2
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 9.8e-68 260.8 181 70.2
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 2.9e-67 259.2 194 66.5
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 4.9e-67 258.5 176 71.6
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 6.4e-67 258.1 183 68.9
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 8.3e-67 257.7 183 68.9
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 1.4e-66 256.9 214 65.9
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 1.4e-66 256.9 202 61.9
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.4e-66 256.9 184 70.7
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.4e-66 256.1 208 62.5
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.4e-66 256.1 208 62.5
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 4.1e-66 255.4 191 67.5
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 7.1e-66 254.6 206 67.0
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.2e-65 253.8 208 61.5
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.6e-65 253.4 219 64.8
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.1e-65 253.1 205 63.4
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 2.7e-65 252.7 212 65.6
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 2.7e-65 252.7 183 67.8
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 3.5e-65 252.3 206 63.1
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.0e-64 250.8 181 69.1
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.0e-64 250.8 181 69.1
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.7e-64 250.0 190 68.4
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 8.6e-64 247.7 206 62.1
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 8.6e-64 247.7 210 62.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 3.3e-63 245.7 233 57.5
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 5.6e-63 245.0 154 74.7
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 9.5e-63 244.2 214 63.1
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 3.1e-61 239.2 262 53.1
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 1.5e-60 236.9 209 62.2
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 2.0e-60 236.5 211 59.2
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 4.4e-60 235.3 154 75.3
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.3e-59 233.8 210 58.1
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 2.9e-59 232.6 203 62.6
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 1.9e-58 229.9 218 57.3
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 3.5e-57 225.7 192 60.4
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 2.1e-54 216.5 211 55.0
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 6.2e-54 214.9 196 57.7
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.4e-53 213.8 205 53.7
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.8e-53 213.4 160 62.5
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 5.2e-53 211.8 208 55.3
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 2.6e-52 209.5 201 59.2
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 3.4e-52 209.1 209 55.0
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 4.4e-52 208.8 171 60.8
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 6.4e-51 204.9 204 53.4
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 1.9e-50 203.4 211 52.6
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.9e-50 203.4 170 58.8
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 3.2e-50 202.6 203 56.2
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 4.2e-50 202.2 211 55.9
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.2e-50 202.2 195 56.9
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 7.1e-50 201.4 188 52.7
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 9.3e-50 201.1 211 52.1
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 2.1e-49 199.9 197 52.8
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 2.7e-49 199.5 209 53.1
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 6.0e-49 198.4 209 52.2
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 7.8e-49 198.0 203 50.7
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.3e-48 197.2 186 54.3
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 3.0e-48 196.1 211 50.7
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 3.0e-48 196.1 211 50.7
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 5.1e-48 195.3 207 51.2
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.1e-48 195.3 214 51.4
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.1e-48 195.3 214 51.4
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.1e-48 195.3 214 51.4
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 1.9e-47 193.4 202 53.0
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 3.3e-47 192.6 212 51.9
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 2.1e-46 189.9 209 50.7
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.8e-46 188.7 160 60.0
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.8e-45 186.8 188 52.1
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.4e-45 186.4 204 50.0
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.6e-44 183.0 204 49.0
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 1.7e-43 180.3 188 50.0
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 2.2e-43 179.9 222 45.0
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 4.2e-42 175.6 145 59.3
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 1.0e-40 171.0 208 45.2
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 2.3e-40 169.9 190 46.3
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 3.3e-39 166.0 212 42.9
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 1.6e-38 163.7 154 53.2
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.6e-38 163.7 185 47.0
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 2.8e-38 162.9 211 43.6
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 4.8e-38 162.2 184 45.7
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.8e-37 160.2 175 48.6
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 4.0e-37 159.1 198 46.5
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 7.6e-36 154.8 202 45.0
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.4e-34 149.8 112 64.3
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 5.5e-34 148.7 151 53.0
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.6e-33 147.1 185 40.5
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 3.0e-32 142.9 113 62.8
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 8.1e-30 134.8 156 44.2
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.4e-29 134.0 156 42.9
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.8e-29 133.7 224 37.9
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 6.9e-29 131.7 104 65.4
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 2.0e-28 130.2 112 62.5
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 2.6e-28 129.8 116 56.9
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 6.5e-27 125.2 77 76.6
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 6.5e-27 125.2 77 76.6
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 6.5e-27 125.2 77 76.6
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 1.9e-26 123.6 109 57.8
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.9e-26 123.6 90 67.8
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.9e-26 123.6 101 61.4
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 7.1e-26 121.7 71 76.1
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 1.2e-25 120.9 71 74.6
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.2e-25 120.9 71 73.2
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 1.6e-25 120.6 71 74.6
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 2.7e-25 119.8 71 70.4
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 6.0e-25 118.6 71 71.8
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 2.3e-24 116.7 71 70.4
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 3.7e-22 109.4 96 58.3
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 9.0e-21 104.8 89 51.7
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 4.2e-18 95.9 136 41.9
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.6e-17 94.0 71 62.0
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 3.4e-12 76.3 79 43.0
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.4e-10 70.9 93 43.0
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 6.1e-09 65.5 108 35.2
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 1.5e-07 60.8 75 32.0
Pp3c19_7090 Physcomitrium patens HOM05D011398 ORTHO05D007243 1.7e-06 57.4 87 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 3.7e-06 56.2 77 36.4


User provided reference genes

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