Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 1.3e-67 260.0 176 100.0
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 6.3e-62 241.1 174 95.4
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 6.6e-43 177.9 174 77.0
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 8.6e-43 177.6 175 81.1
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 7.3e-42 174.5 173 70.5
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 9.5e-42 174.1 175 72.6
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 4.0e-40 168.7 176 60.2
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.5e-39 166.8 181 74.0
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.3e-38 163.7 186 67.2
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 4.9e-38 161.8 176 69.3
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 4.1e-37 158.7 171 72.5
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.6e-36 156.8 175 73.7
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 1.7e-35 153.3 178 72.5
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.9e-34 149.8 174 53.4
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 2.8e-33 146.0 172 68.0
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.8e-32 143.3 158 71.5
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 2.4e-32 142.9 181 73.5
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 3.1e-32 142.5 176 71.6
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 4.0e-32 142.1 173 68.8
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 2.0e-31 139.8 171 59.6
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 3.4e-31 139.0 181 72.4
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 2.9e-30 136.0 162 66.7
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.9e-29 133.3 177 59.9
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.9e-29 133.3 172 64.0
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 5.4e-29 131.7 173 72.3
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 1.2e-28 130.6 178 69.7
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 2.7e-28 129.4 172 62.8
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 2.7e-28 129.4 172 62.8
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 3.5e-28 129.0 176 64.8
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 6.0e-28 128.3 176 59.1
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 7.8e-28 127.9 177 66.1
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 1.0e-27 127.5 180 64.4
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 1.3e-27 127.1 178 70.8
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 3.9e-27 125.6 174 66.1
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 3.3e-26 122.5 179 53.6
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 3.3e-26 122.5 177 68.9
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.3e-26 122.5 173 64.2
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 3.3e-26 122.5 177 66.7
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.6e-26 121.7 180 68.3
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.6e-26 121.7 177 68.9
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 9.6e-26 120.9 171 58.5
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 1.6e-25 120.2 178 63.5
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.6e-25 120.2 177 57.1
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.8e-25 119.4 173 64.2
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.8e-25 119.4 173 64.2
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 2.8e-25 119.4 165 67.9
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 2.8e-25 119.4 176 56.8
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 6.2e-25 118.2 119 63.0
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.2e-25 118.2 175 47.4
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.1e-24 117.5 180 66.7
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.1e-24 117.5 175 47.4
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.4e-24 117.1 178 66.3
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 1.4e-24 117.1 174 63.8
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.8e-24 116.7 173 46.8
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.4e-24 116.3 179 59.2
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 5.2e-24 115.2 173 63.0
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 5.2e-24 115.2 177 62.1
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 6.9e-24 114.8 170 58.8
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 1.5e-23 113.6 178 63.5
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 2.0e-23 113.2 178 60.7
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.4e-23 112.5 133 54.1
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 4.4e-23 112.1 181 63.0
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 5.8e-23 111.7 175 58.9
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.8e-23 111.7 178 48.3
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.3e-22 110.5 178 53.4
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.3e-22 110.5 178 47.8
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.7e-22 110.2 139 48.9
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.7e-22 110.2 169 56.8
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 1.7e-22 110.2 181 62.4
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 2.9e-22 109.4 178 64.6
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 1.4e-21 107.1 171 66.1
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.9e-21 106.7 178 46.1
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 2.4e-21 106.3 173 57.8
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 5.4e-21 105.1 174 54.6
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 7.1e-21 104.8 171 59.1
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 9.3e-21 104.4 180 58.9
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 2.1e-20 103.2 168 58.3
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 2.1e-20 103.2 176 63.1
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 7.8e-20 101.3 171 50.9
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.7e-19 100.1 175 45.1
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 2.3e-19 99.8 171 62.6
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.3e-19 99.8 172 51.7
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 3.9e-19 99.0 171 63.7
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 3.9e-19 99.0 187 50.8
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 3.9e-19 99.0 187 56.1
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 5.1e-19 98.6 156 66.0
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 5.1e-19 98.6 171 62.6
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.1e-18 97.4 146 68.5
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.5e-18 96.3 119 57.1
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 5.6e-18 95.1 171 61.4
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 7.3e-18 94.7 171 46.8
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 2.1e-17 93.2 171 42.7
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 2.1e-17 93.2 92 89.1
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 4.8e-17 92.0 172 62.2
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 6.2e-17 91.7 172 41.9
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 6.2e-17 91.7 172 41.9
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.4e-16 90.5 184 54.9
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 2.4e-16 89.7 172 39.5
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 2.4e-16 89.7 172 41.3
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 5.3e-16 88.6 172 40.1
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 5.3e-16 88.6 172 40.1
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 6.9e-16 88.2 144 61.1
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.2e-15 87.4 216 46.8
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 1.5e-15 87.0 174 39.1
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.5e-15 87.0 172 41.9
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.5e-15 87.0 257 42.0
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 3.4e-15 85.9 168 39.9
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 5.8e-15 85.1 172 58.1
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 1.7e-14 83.6 173 39.3
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 2.9e-14 82.8 214 46.7
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 3.8e-14 82.4 85 54.1
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.9e-14 82.0 174 58.6
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 8.4e-14 81.3 194 38.1
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.1e-13 80.9 172 39.5
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 1.4e-13 80.5 95 49.5
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.4e-13 80.5 176 39.2
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.4e-13 80.5 176 39.2
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.4e-13 80.5 176 39.2
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 4.2e-13 79.0 127 42.5
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 1.2e-12 77.4 170 40.0
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 2.7e-12 76.3 173 40.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 3.5e-12 75.9 182 48.9
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 4.6e-12 75.5 125 40.0
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.6e-12 75.5 170 53.5
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 7.9e-12 74.7 120 45.8
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.3e-11 73.9 124 49.2
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.0e-11 72.8 182 36.3
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.9e-10 70.1 193 36.3
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 7.4e-10 68.2 123 41.5
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 4.8e-09 65.5 172 55.2
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 4.0e-08 62.4 173 50.3
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.3e-08 62.0 170 48.2
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 6.9e-08 61.6 173 48.0
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 7.6e-07 58.2 173 33.5
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 1.7e-06 57.0 116 38.8
Lj9P479T20 Lonicera japonica HOM05D005335 ORTHO05D006472 2.9e-06 56.2 69 89.9


User provided reference genes

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