Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 2.1e-277 958.4 485 100.0
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 2.5e-217 758.8 498 81.3
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 3.9e-178 628.6 435 73.3
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 4.2e-172 608.6 474 66.9
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 6.7e-154 548.1 441 64.2
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.3e-149 533.9 476 60.1
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 2.3e-146 523.1 440 61.6
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 8.5e-141 504.6 475 56.2
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 4.7e-139 498.8 443 60.5
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 5.3e-135 485.3 440 58.9
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 6.9e-135 485.0 437 60.9
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 1.3e-133 480.7 435 57.5
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 2.9e-133 479.6 476 55.5
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 7.2e-132 474.9 439 57.9
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 2.7e-131 473.0 476 52.9
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 1.0e-130 471.1 439 57.4
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 1.0e-130 471.1 439 57.4
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 3.3e-129 466.1 443 55.3
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 1.3e-128 464.2 476 53.2
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 3.7e-128 462.6 458 57.6
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 1.8e-127 460.3 441 56.7
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.4e-127 459.9 445 55.7
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 5.3e-127 458.8 477 53.7
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.0e-125 454.5 442 56.1
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 7.2e-124 448.4 451 54.3
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 1.2e-123 447.6 441 56.0
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 4.7e-123 445.7 441 56.0
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 1.4e-122 444.1 443 56.2
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 1.8e-122 443.7 440 55.5
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 8.8e-122 441.4 439 53.8
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 8.8e-122 441.4 451 54.1
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 1.2e-121 441.0 440 56.1
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 1.5e-121 440.7 438 53.0
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.0e-121 440.3 470 52.8
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 2.6e-121 439.9 458 51.7
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 5.7e-121 438.7 436 55.3
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 5.7e-121 438.7 394 58.6
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 2.8e-120 436.4 444 51.8
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 6.3e-120 435.3 460 50.9
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 1.1e-119 434.5 436 54.6
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 1.7e-117 427.2 448 52.9
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 3.2e-116 422.9 444 54.5
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 1.4e-114 417.5 461 52.1
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 1.3e-112 411.0 447 52.3
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 8.3e-112 408.3 451 46.6
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 3.1e-111 406.4 442 52.5
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 1.9e-108 397.1 409 55.0
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 5.5e-108 395.6 468 46.8
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 6.1e-107 392.1 449 50.8
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 1.4e-106 391.0 442 48.6
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 3.0e-106 389.8 442 48.4
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 5.7e-105 385.6 441 48.5
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 7.5e-105 385.2 445 49.9
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 1.3e-104 384.4 440 49.5
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 1.4e-103 380.9 443 48.3
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 1.6e-102 377.5 446 47.8
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 1.1e-100 371.3 477 46.8
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 5.6e-100 369.0 443 47.0
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 1.2e-99 367.9 440 47.0
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.6e-99 367.5 443 44.5
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 5.2e-98 362.5 428 50.7
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 5.2e-98 362.5 450 47.3
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 8.9e-98 361.7 435 44.6
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 1.5e-97 360.9 439 45.6
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 2.0e-97 360.5 435 44.6
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 5.8e-97 359.0 440 45.5
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 5.8e-97 359.0 438 44.1
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 1.1e-95 354.8 429 46.6
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 9.2e-95 351.7 443 45.8
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 4.6e-94 349.4 446 46.0
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 7.3e-92 342.0 444 44.4
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 9.5e-92 341.7 437 46.0
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 1.3e-88 331.3 537 40.0
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 1.1e-87 328.2 433 46.2
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 7.0e-87 325.5 456 41.9
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 3.0e-85 320.1 254 59.1
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 8.6e-85 318.5 465 41.3
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 8.6e-85 318.5 464 41.4
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 5.6e-84 315.8 448 44.9
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 4.7e-83 312.8 428 43.0
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 4.0e-82 309.7 456 41.2
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 4.0e-82 309.7 464 41.4
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 5.2e-82 309.3 457 41.8
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.0e-81 307.4 292 55.8
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 9.9e-81 305.1 231 66.2
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 3.2e-79 300.1 256 60.9
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 6.0e-78 295.8 234 62.4
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 1.7e-72 277.7 435 37.7
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 1.1e-71 275.0 441 38.3
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.6e-65 253.8 441 37.0
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 4.4e-65 253.1 344 42.4
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 3.5e-62 243.4 466 34.1
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 3.9e-61 240.0 281 50.9
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 6.2e-59 232.6 337 45.1
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.4e-58 231.5 349 39.3
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.3e-56 224.9 155 63.9
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.4e-55 219.5 154 62.3
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 6.7e-53 212.6 169 60.4
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 1.6e-51 208.0 155 64.5
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.8e-51 207.2 142 71.8
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 8.1e-51 205.7 142 71.8
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 9.9e-49 198.7 146 67.8
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 1.3e-48 198.4 129 69.0
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 2.9e-48 197.2 213 51.2
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 4.9e-48 196.4 143 67.8
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 1.2e-46 191.8 144 69.4
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 4.6e-46 189.9 187 49.7
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 3.9e-45 186.8 143 65.7
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 6.2e-43 179.5 448 29.7
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.8e-42 177.9 499 30.5
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 3.1e-42 177.2 321 37.4
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.0e-41 174.5 118 66.9
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.3e-40 171.8 203 45.3
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.7e-40 171.4 243 41.2
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 4.9e-40 169.9 186 52.2
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 4.2e-39 166.8 440 29.5
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 7.9e-38 162.5 139 58.3
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.5e-36 158.3 144 54.9
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 3.3e-36 157.1 300 37.3
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 1.6e-35 154.8 112 57.1
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.7e-32 144.8 140 54.3
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 5.0e-32 143.3 103 68.0
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.1e-31 142.1 254 39.4
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.1e-31 142.1 372 31.5
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.0e-28 131.3 131 43.5
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 3.4e-25 120.6 130 53.8
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 4.5e-25 120.2 127 40.2
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.0e-24 119.0 124 47.6
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 3.2e-23 114.0 153 45.1
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.4e-21 108.6 80 62.5
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 3.9e-21 107.1 70 75.7
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 4.1e-18 97.1 136 45.6
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 4.8e-11 73.6 176 31.8
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 2.4e-10 71.2 109 42.2
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 2.0e-09 68.2 70 52.9


User provided reference genes

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