Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 3.8e-123 444.9 229 100.0
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 3.6e-118 428.3 229 96.9
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 1.4e-106 389.8 229 88.6
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 1.3e-94 350.1 282 70.2
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 1.1e-93 347.1 229 76.4
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 1.1e-93 347.1 229 76.9
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 5.9e-92 341.3 229 79.5
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 1.4e-88 330.1 229 76.4
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 3.9e-88 328.6 231 75.8
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 5.1e-88 328.2 238 75.2
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 8.8e-88 327.4 230 76.5
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 1.1e-87 327.0 232 74.6
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 1.5e-87 326.6 231 74.5
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 5.7e-87 324.7 230 75.7
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 2.8e-86 322.4 226 74.8
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 1.1e-85 320.5 226 72.6
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.8e-85 319.7 226 72.1
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.1e-85 318.9 226 72.1
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 6.9e-85 317.8 223 74.9
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 2.0e-84 316.2 231 74.0
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.6e-84 315.8 226 73.0
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.7e-84 314.3 226 71.2
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 8.5e-83 310.8 226 73.5
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.4e-82 310.1 229 69.9
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 3.2e-82 308.9 229 72.1
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 5.5e-82 308.1 221 73.3
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 5.5e-82 308.1 196 79.1
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 7.2e-82 307.8 229 71.2
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 2.1e-81 306.2 196 78.6
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 4.7e-81 305.1 228 70.6
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 7.9e-81 304.3 230 71.3
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 2.3e-80 302.8 225 73.3
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 2.3e-80 302.8 229 71.6
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 6.7e-80 301.2 231 71.9
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 6.7e-80 301.2 232 68.5
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.1e-79 300.4 238 71.4
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.5e-79 300.1 238 71.8
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 3.3e-79 298.9 205 76.1
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 7.4e-79 297.7 229 69.4
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.7e-78 296.6 225 70.7
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 2.8e-78 295.8 230 69.6
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 3.7e-78 295.4 225 68.9
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 3.1e-77 292.4 228 70.2
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 9.1e-77 290.8 226 69.0
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.2e-76 290.4 234 66.2
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 4.5e-76 288.5 223 70.4
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 5.9e-76 288.1 226 67.3
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 5.9e-76 288.1 189 76.7
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 7.7e-76 287.7 195 75.4
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 1.7e-75 286.6 201 74.6
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 2.2e-75 286.2 214 71.5
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 3.8e-75 285.4 230 68.3
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 5.0e-75 285.0 203 71.9
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 8.5e-75 284.3 232 66.4
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 8.5e-75 284.3 208 70.2
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 3.6e-73 278.9 214 70.6
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 3.0e-72 275.8 214 67.8
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 3.9e-72 275.4 240 63.8
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 1.1e-71 273.9 172 79.7
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 2.0e-71 273.1 233 63.5
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 5.7e-71 271.6 196 72.4
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 9.7e-71 270.8 189 72.5
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.3e-70 270.4 215 67.9
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 4.8e-70 268.5 171 76.6
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 1.1e-69 267.3 233 63.1
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 1.8e-69 266.5 222 64.4
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 1.8e-69 266.5 215 67.4
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 5.3e-69 265.0 235 63.0
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 5.3e-69 265.0 176 77.3
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.3e-67 260.4 240 60.8
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.3e-67 260.4 235 63.0
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 1.3e-67 260.4 244 61.9
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 2.2e-67 259.6 188 70.7
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 2.9e-67 259.2 223 63.2
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 6.5e-67 258.1 236 58.1
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 8.5e-67 257.7 231 62.8
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 8.5e-67 257.7 235 62.6
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 1.5e-66 256.9 239 61.1
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 1.9e-66 256.5 233 60.9
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 1.9e-66 256.5 233 60.9
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 1.2e-65 253.8 224 62.5
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 3.6e-65 252.3 152 77.6
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 4.7e-65 251.9 246 60.6
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 2.0e-63 246.5 212 62.7
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 5.7e-63 245.0 219 63.0
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 3.7e-62 242.3 265 54.0
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 1.1e-61 240.7 235 58.3
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 7.0e-61 238.0 185 63.2
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 5.0e-59 231.9 252 54.0
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 1.9e-58 229.9 137 81.0
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 4.5e-52 208.8 231 56.7
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 1.1e-42 177.6 155 60.0
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 1.2e-41 174.1 99 82.8
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 1.4e-40 170.6 99 79.8
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 1.4e-40 170.6 154 65.6
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 5.8e-39 165.2 159 56.6
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 4.1e-37 159.1 195 45.6
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 4.6e-36 155.6 164 61.6
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 5.0e-35 152.1 133 63.9
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 4.4e-31 139.0 100 75.0
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 8.3e-30 134.8 152 46.1
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 8.1e-25 118.2 63 87.3
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 1.4e-24 117.5 111 54.1
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.2e-23 114.4 64 81.2
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 1.0e-19 101.3 100 61.0
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 1.0e-19 101.3 144 46.5
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 7.6e-15 85.1 57 73.7
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 2.2e-14 83.6 100 53.0
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 2.9e-14 83.2 61 72.1
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.4e-14 82.0 59 72.9
MCO03G440 Micromonas commoda HOM05D007115 ORTHO05D008923 1.1e-08 64.7 146 31.5
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 2.4e-08 63.5 102 37.3
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.1e-08 63.2 53 62.3


User provided reference genes

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