Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 1.5e-67 260.0 196 100.0
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 4.7e-66 255.0 196 98.5
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.2e-56 223.8 197 66.5
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.6e-53 213.4 199 62.8
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 1.8e-49 199.9 195 77.9
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 7.6e-48 194.5 196 66.3
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 3.2e-46 189.1 197 59.4
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 7.1e-46 188.0 197 58.9
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 1.6e-45 186.8 196 60.2
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 3.5e-45 185.7 202 60.4
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 7.8e-45 184.5 196 57.7
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.7e-44 183.3 198 60.6
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 1.7e-44 183.3 208 56.2
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 3.9e-44 182.2 208 66.8
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 8.7e-44 181.0 200 54.5
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 8.7e-44 181.0 200 54.5
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.5e-43 180.3 196 55.6
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.5e-43 180.3 200 54.5
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 1.5e-43 180.3 190 55.8
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.9e-43 179.9 198 54.0
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.9e-43 179.9 201 53.2
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.9e-43 179.9 196 55.6
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 5.6e-43 178.3 188 54.3
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 9.6e-43 177.6 201 61.2
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 2.1e-42 176.4 195 53.8
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 4.8e-42 175.3 201 58.7
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 4.8e-42 175.3 197 54.3
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 6.2e-42 174.9 199 71.9
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 8.1e-42 174.5 196 64.8
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 8.1e-42 174.5 196 64.8
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 8.1e-42 174.5 197 55.3
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 2.4e-41 172.9 196 53.6
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 4.0e-41 172.2 196 58.2
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 5.3e-41 171.8 188 55.3
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 9.0e-41 171.0 184 54.9
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 9.0e-41 171.0 197 55.8
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-40 170.2 197 54.3
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 1.5e-40 170.2 183 54.1
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.4e-40 169.1 197 54.8
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 4.5e-40 168.7 195 61.5
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 9.9e-40 167.5 197 65.0
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.3e-39 167.2 196 50.0
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.3e-39 167.2 196 57.1
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 1.7e-39 166.8 204 70.6
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 1.7e-39 166.8 189 52.9
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 2.2e-39 166.4 184 64.1
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 2.9e-39 166.0 189 52.4
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 2.9e-39 166.0 193 53.4
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 3.8e-39 165.6 184 60.3
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 4.9e-39 165.2 200 53.5
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 6.4e-39 164.9 197 50.8
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 8.4e-39 164.5 186 53.2
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 1.1e-38 164.1 202 67.8
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.4e-38 163.7 197 58.9
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 1.9e-38 163.3 202 67.8
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 7.1e-38 161.4 211 58.3
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 1.2e-37 160.6 184 59.8
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.6e-37 160.2 202 53.0
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 2.1e-37 159.8 200 53.5
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 2.7e-37 159.5 212 67.9
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.7e-37 159.5 196 51.0
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 3.5e-37 159.1 211 53.1
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 3.5e-37 159.1 184 60.3
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 3.5e-37 159.1 200 55.0
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.6e-37 158.7 195 51.8
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 6.0e-37 158.3 196 50.0
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 2.3e-36 156.4 190 50.5
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 3.0e-36 156.0 193 50.3
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 3.3e-35 152.5 196 49.0
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 9.6e-35 151.0 221 57.9
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 9.6e-35 151.0 198 49.0
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.6e-34 150.2 183 52.5
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 3.7e-34 149.1 183 70.5
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 3.7e-34 149.1 183 54.6
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 3.7e-34 149.1 183 54.6
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 3.7e-34 149.1 183 50.3
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 6.2e-34 148.3 213 50.7
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 8.1e-34 147.9 201 54.2
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 8.1e-34 147.9 183 54.1
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 8.1e-34 147.9 183 54.1
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 1.1e-33 147.5 212 61.8
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.1e-33 147.5 194 48.5
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.4e-33 147.1 248 46.4
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 2.4e-33 146.4 183 55.2
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 2.4e-33 146.4 246 58.5
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 2.4e-33 146.4 246 58.5
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 2.4e-33 146.4 183 63.4
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 2.4e-33 146.4 185 58.4
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 4.0e-33 145.6 184 70.7
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 4.0e-33 145.6 214 50.9
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 9.0e-33 144.4 183 51.4
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.2e-32 144.1 183 48.6
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.2e-32 144.1 195 47.2
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 1.5e-32 143.7 204 51.0
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 2.0e-32 143.3 186 46.8
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 2.0e-32 143.3 199 45.2
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 4.5e-32 142.1 193 45.6
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 9.9e-32 141.0 183 49.7
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 9.9e-32 141.0 183 58.5
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 6.4e-31 138.3 195 45.6
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 6.4e-31 138.3 183 49.2
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.6e-29 133.7 184 46.7
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.6e-29 133.7 182 46.7
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 4.6e-29 132.1 222 48.6
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 7.9e-29 131.3 184 45.7
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 2.3e-28 129.8 177 53.7
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 4.3e-27 125.6 197 55.3
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 2.8e-26 122.9 177 52.5
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 2.8e-26 122.9 177 52.5
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 2.8e-26 122.9 189 42.9
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 3.1e-25 119.4 180 46.7
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 8.4e-23 111.3 151 47.7
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 8.4e-23 111.3 89 65.2
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 3.2e-22 109.4 157 43.3
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.1e-20 102.1 164 46.3
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 1.3e-18 97.4 182 34.6
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 1.3e-18 97.4 183 42.6
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 1.6e-18 97.1 174 40.2
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.8e-18 95.5 67 71.6
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 8.2e-18 94.7 134 61.2
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 5.3e-17 92.0 160 40.0
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 6.9e-17 91.7 146 41.8
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 2.6e-16 89.7 188 33.0
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.9e-16 88.6 130 46.9
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.7e-15 87.0 193 39.9
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 2.2e-15 86.7 184 34.2
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 5.0e-15 85.5 175 32.0
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 1.6e-13 80.5 194 37.6
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.0e-11 73.6 118 39.8
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 4.3e-11 72.4 172 53.5
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 1.4e-06 57.4 119 53.8
CDE10G0174 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 5.5e-06 55.5 61 54.1
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 9.4e-06 54.7 38 63.2


User provided reference genes

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