Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 4.2e-87 324.7 168 100.0
Haze_07172 Corylus avellana HOM05D007269 ORTHO05D008531 1.6e-78 296.2 169 94.1
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 6.5e-40 167.9 175 59.4
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 4.1e-34 148.7 159 59.1
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 3.4e-28 129.0 161 47.8
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 1.7e-27 126.7 162 45.7
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 3.7e-27 125.6 160 46.9
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 4.1e-26 122.1 159 48.4
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 2.0e-25 119.8 153 45.1
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 7.7e-25 117.9 163 45.4
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 8.5e-24 114.4 156 45.5
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 1.9e-23 113.2 151 45.0
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 4.2e-23 112.1 158 44.9
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 1.2e-22 110.5 150 46.7
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 1.6e-22 110.2 164 43.9
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 3.6e-22 109.0 150 42.7
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 9.8e-20 100.9 206 35.4
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 2.0e-17 93.2 165 38.8
Cpa.g.sc4.165 Carica papaya HOM05D007269 ORTHO05D008531 3.5e-17 92.4 195 36.4
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 4.5e-17 92.0 173 37.0
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 1.0e-16 90.9 164 39.6
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 2.3e-16 89.7 188 34.6
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 7.3e-15 84.7 175 37.1
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 7.3e-15 84.7 175 37.1
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 7.3e-15 84.7 175 37.1
MD06G1137900 Malus domestica HOM05D007269 ORTHO05D008531 1.2e-14 84.0 163 40.5
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.6e-14 83.6 179 36.3
MD14G1153300 Malus domestica HOM05D007269 ORTHO05D008531 1.6e-14 83.6 168 41.7
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.7e-14 82.0 180 37.2
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 6.1e-14 81.6 172 37.2
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 1.0e-13 80.9 171 37.4
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 1.4e-13 80.5 176 36.9
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 3.0e-13 79.3 107 44.9
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 4.0e-13 79.0 161 36.6
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 5.2e-13 78.6 176 32.4
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 1.2e-12 77.4 160 41.2
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 1.5e-12 77.0 194 34.0
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 1.5e-12 77.0 168 32.1
Dinv23173 Davidia involucrata HOM05D007269 ORTHO05D008531 2.0e-12 76.6 166 39.8
VMungo0251G2992 Vigna mungo HOM05D031312 ORTHO05D008531 3.4e-12 75.9 156 41.0
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 5.7e-12 75.1 159 39.6
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 5.7e-12 75.1 159 39.6
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 5.7e-12 75.1 166 34.3
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 9.8e-12 74.3 159 38.4
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 1.7e-11 73.6 167 33.5
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 6.4e-11 71.6 163 31.9
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 8.3e-11 71.2 191 29.8
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 8.3e-11 71.2 192 33.3
Solyc03g097430.1 Solanum lycopersicum HOM05D007269 ORTHO05D008531 1.1e-10 70.9 181 29.3
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 1.4e-10 70.5 164 33.5
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.4e-10 70.5 116 41.4
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 2.4e-10 69.7 184 32.1
Sopen03g028190 Solanum pennellii HOM05D007269 ORTHO05D008531 2.4e-10 69.7 172 32.0
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 3.2e-10 69.3 176 33.5
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 5.4e-10 68.6 164 33.5
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 7.0e-10 68.2 200 31.5
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 1.2e-09 67.4 194 32.0
Rhsim12G0176800 Rhododendron simsii HOM05D007269 ORTHO05D008531 1.2e-09 67.4 151 36.4
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 2.0e-09 66.6 240 27.5
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 2.0e-09 66.6 186 28.0
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 2.7e-09 66.2 161 38.5
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 3.5e-09 65.9 184 33.2
Rhsim12G0023500 Rhododendron simsii HOM05D007269 ORTHO05D008531 4.6e-09 65.5 141 38.3
FAN15G2538 Fragaria x ananassa HOM05D007269 ORTHO05D008531 5.9e-09 65.1 151 35.8
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 1.0e-08 64.3 181 33.1
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 1.7e-08 63.5 183 29.5
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 2.3e-08 63.2 188 30.3
PGSC0003DMG400026484 Solanum tuberosum HOM05D007269 ORTHO05D008531 6.6e-08 61.6 191 28.3
DCAR_021637 Daucus carota HOM05D007269 ORTHO05D008531 8.6e-08 61.2 195 30.3
THA.LOC104825024 Tarenaya hassleriana HOM05D012271 ORTHO05D014413 1.1e-07 60.8 132 34.8
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 1.5e-07 60.5 199 30.7
CARHR257650 Cardamine hirsuta HOM05D012271 ORTHO05D014413 1.5e-07 60.5 138 35.5
TAR629G3154 Trochodendron aralioides HOM05D007269 ORTHO05D008531 1.5e-07 60.5 124 36.3
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 2.5e-07 59.7 246 26.4
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 3.3e-07 59.3 192 28.6
PSO017G1627 Papaver somniferum HOM05D007269 ORTHO05D008531 3.3e-07 59.3 154 32.5
Zm00001eb364140 Zea mays HOM05D007269 ORTHO05D008531 3.3e-07 59.3 199 29.6
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 5.6e-07 58.5 87 39.1
FAN12G4201 Fragaria x ananassa HOM05D007269 ORTHO05D008531 5.6e-07 58.5 202 28.2
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 9.5e-07 57.8 187 29.9
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 1.2e-06 57.4 176 30.1
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 1.6e-06 57.0 200 31.0
Rhsim12G0177300 Rhododendron simsii HOM05D007269 ORTHO05D008531 2.8e-06 56.2 206 28.2
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 3.6e-06 55.8 199 30.2
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 6.2e-06 55.1 229 26.2
CsaV3_6G008060 Cucumis sativus L. HOM05D026927 ORTHO05D008531 8.0e-06 54.7 127 31.5


User provided reference genes

Program Settings