Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 8.5e-102 373.6 182 100.0
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 4.7e-92 341.3 223 78.9
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 8.2e-81 303.9 181 82.3
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.3e-70 270.0 182 73.1
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.9e-70 268.9 182 73.1
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 3.2e-69 265.4 182 69.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.6e-68 263.1 182 72.5
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.1e-68 262.7 190 70.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.3e-67 259.2 182 70.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 4.0e-67 258.5 184 69.6
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.8e-67 257.3 182 69.2
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.2e-66 256.9 163 77.9
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.2e-66 256.9 183 73.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.0e-66 256.1 182 69.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 3.4e-66 255.4 186 69.9
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.7e-66 254.6 183 68.9
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 7.5e-66 254.2 182 70.3
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 9.8e-66 253.8 182 69.2
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.7e-65 253.1 186 68.8
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.2e-65 252.7 185 70.3
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 3.7e-65 251.9 186 71.5
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 8.3e-65 250.8 185 68.6
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.8e-64 249.6 182 65.9
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 2.4e-64 249.2 189 65.6
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.4e-64 249.2 182 70.3
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.1e-64 248.8 189 67.2
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.1e-64 248.8 182 69.8
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.1e-64 248.8 182 70.3
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.4e-64 248.1 225 60.4
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 7.0e-64 247.7 182 64.8
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 9.2e-64 247.3 185 67.0
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.2e-63 246.9 190 64.2
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.6e-63 246.5 182 69.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.0e-63 246.1 190 65.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 2.0e-63 246.1 183 63.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.0e-63 246.1 190 64.2
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 3.5e-63 245.4 185 68.6
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.5e-63 245.0 185 66.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.5e-63 245.0 182 69.2
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.5e-63 245.0 182 68.7
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.0e-62 243.8 201 63.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 5.0e-62 241.5 182 65.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 6.6e-62 241.1 185 67.6
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 8.6e-62 240.7 184 66.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.1e-61 240.4 184 70.1
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.5e-61 240.0 184 64.7
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.5e-61 240.0 185 67.0
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.5e-61 239.2 185 65.9
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.6e-61 238.0 182 65.9
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 5.6e-61 238.0 185 65.4
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 7.3e-61 237.7 184 65.8
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 7.3e-61 237.7 192 64.1
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.8e-60 235.7 191 63.9
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.8e-60 235.7 188 64.4
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.6e-60 235.3 182 65.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.1e-60 234.6 183 63.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.1e-60 234.6 183 61.7
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 8.0e-60 234.2 182 64.8
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 8.0e-60 234.2 130 81.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.0e-60 234.2 183 67.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.8e-59 233.0 182 64.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 3.0e-59 232.3 182 64.8
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 3.0e-59 232.3 249 52.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.0e-59 231.9 161 70.2
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 8.9e-59 230.7 166 67.5
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 8.9e-59 230.7 185 64.9
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.0e-58 229.6 168 65.5
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 4.4e-58 228.4 182 64.8
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 5.7e-58 228.0 188 61.2
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 5.7e-58 228.0 139 75.5
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 7.5e-58 227.6 130 79.2
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 7.5e-58 227.6 183 65.6
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.3e-57 226.9 134 78.4
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-57 226.1 182 61.0
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.9e-57 225.7 195 62.1
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.7e-57 225.3 183 62.8
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 4.9e-57 224.9 183 60.7
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.9e-57 224.9 182 60.4
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 6.4e-57 224.6 189 63.5
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 8.3e-57 224.2 142 73.2
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.1e-56 223.8 182 59.9
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.4e-56 223.4 186 59.7
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.8e-56 223.0 193 60.6
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 3.2e-56 222.2 192 60.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.2e-56 222.2 129 79.1
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.2e-56 222.2 153 70.6
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 4.1e-56 221.9 189 60.3
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 9.2e-56 220.7 190 60.0
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.2e-55 220.3 184 62.5
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.2e-55 220.3 188 60.1
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.6e-55 219.9 185 59.5
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.6e-55 219.9 182 62.6
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.0e-55 219.5 136 75.7
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.0e-55 219.5 173 64.7
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.7e-55 219.2 187 60.4
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.7e-55 219.2 273 47.6
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 3.5e-55 218.8 189 59.8
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.5e-55 218.8 194 57.7
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 3.5e-55 218.8 196 57.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.5e-55 218.8 182 61.5
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.6e-55 218.4 145 72.4
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 5.9e-55 218.0 158 67.1
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 7.8e-55 217.6 189 59.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.3e-54 216.1 186 58.6
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.5e-53 213.4 187 56.7
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.5e-53 212.6 204 55.9
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.5e-53 212.6 182 59.3
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.5e-53 212.6 189 57.7
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 5.6e-53 211.5 185 58.4
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.6e-52 209.9 189 57.7
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.1e-52 209.5 189 55.6
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.8e-52 209.1 194 56.7
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.0e-51 207.2 115 80.0
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.1e-51 205.7 192 56.8
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 8.9e-51 204.1 195 55.9
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 9.8e-50 200.7 188 57.4
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-49 199.5 159 66.0
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 4.9e-49 198.4 134 68.7
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.4e-48 196.8 184 58.7
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 9.2e-48 194.1 159 62.9
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 6.6e-46 188.0 117 71.8
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 8.6e-46 187.6 128 69.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.2e-44 183.7 118 72.0
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 7.1e-40 167.9 123 61.8
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.0e-38 162.5 107 74.8
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 5.1e-38 161.8 125 56.8
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.6e-36 156.8 124 58.9
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.6e-36 155.6 87 78.2
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 9.9e-34 147.5 135 60.0
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.6e-30 134.8 86 72.1
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.3e-29 132.1 130 57.7
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 9.6e-29 131.0 72 76.4
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-28 130.6 80 76.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 4.7e-28 128.6 115 52.2
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.4e-27 126.3 77 70.1
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.2e-26 124.0 65 83.1
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-25 120.6 72 72.2
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 4.2e-24 115.5 112 59.8
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.6e-20 103.6 60 75.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.1e-19 100.9 116 41.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 5.3e-19 98.6 102 43.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.4e-16 89.7 86 57.0
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 2.2e-09 66.6 35 74.3
SGA_v2.0_scaffold5G02809 Striga asiatica HOM05D005248 ORTHO05D006409 6.4e-09 65.1 147 37.4
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.7e-07 59.7 62 50.0


User provided reference genes

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