Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 9.2e-281 969.5 478 100.0
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 9.5e-262 906.4 512 89.3
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.0e-210 736.9 486 77.0
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 6.5e-186 654.4 489 68.3
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 5.2e-183 644.8 489 66.1
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 2.0e-182 642.9 488 65.2
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.3e-181 640.2 489 64.6
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.2e-176 623.6 488 64.5
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.6e-176 623.2 494 62.8
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 3.6e-176 622.1 515 63.1
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 2.0e-174 616.3 463 65.2
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 3.4e-174 615.5 489 63.2
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 7.5e-174 614.4 463 64.8
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 2.2e-173 612.8 485 62.1
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 3.7e-173 612.1 491 61.9
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 6.3e-173 611.3 490 62.7
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 4.1e-172 608.6 489 62.6
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 4.1e-172 608.6 485 61.9
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 7.0e-172 607.8 483 61.7
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 5.9e-171 604.7 491 61.9
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.3e-170 602.8 480 61.7
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 6.4e-165 584.7 485 61.6
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 8.3e-165 584.3 484 62.6
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 9.2e-164 580.9 484 61.0
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.2e-163 580.5 484 61.2
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 2.7e-163 579.3 485 61.0
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 2.5e-161 572.8 503 57.3
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 3.1e-159 565.8 492 60.4
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 2.6e-158 562.8 489 57.3
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 3.7e-157 558.9 489 56.2
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 6.4e-157 558.1 495 57.6
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 1.1e-156 557.4 484 59.1
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.9e-156 556.6 485 57.7
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 5.4e-156 555.1 489 57.5
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 7.0e-156 554.7 423 65.0
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 2.7e-155 552.7 489 56.2
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 6.0e-155 551.6 488 56.8
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 3.0e-154 549.3 485 55.5
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 6.6e-154 548.1 491 56.2
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 6.6e-154 548.1 491 56.2
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 3.3e-153 545.8 490 56.3
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 7.3e-153 544.7 491 56.0
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 2.8e-152 542.7 491 56.2
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 8.9e-151 537.7 471 58.8
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.2e-150 537.3 487 55.0
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 1.5e-150 537.0 492 55.7
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 2.6e-150 536.2 420 62.4
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 3.4e-150 535.8 492 55.5
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 4.4e-150 535.4 501 54.7
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 9.8e-150 534.3 490 56.3
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.3e-149 533.9 493 56.0
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 2.2e-149 533.1 492 55.5
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.2e-149 533.1 462 60.4
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 1.4e-148 530.4 492 55.1
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.9e-148 530.0 492 56.5
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.3e-146 523.9 488 55.5
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 7.3e-145 518.1 510 52.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 3.6e-144 515.8 485 55.9
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 3.4e-142 509.2 359 70.5
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 4.9e-141 505.4 488 55.1
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.3e-138 497.3 495 52.1
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 5.1e-138 495.4 486 53.3
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.9e-137 493.4 483 53.6
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.9e-137 493.4 491 53.0
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 8.9e-135 484.6 493 51.3
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 2.9e-133 479.6 389 61.7
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 5.4e-132 475.3 420 55.7
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 2.7e-131 473.0 494 51.6
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 6.0e-131 471.9 496 49.6
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 1.0e-130 471.1 489 51.1
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 6.9e-127 458.4 424 53.8
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 4.4e-126 455.7 527 47.8
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 2.2e-125 453.4 489 48.7
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 6.4e-125 451.8 549 46.4
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.1e-124 451.1 495 49.7
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.9e-121 440.3 501 46.3
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.3e-120 437.6 482 48.5
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 3.1e-119 433.0 427 52.0
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 6.9e-119 431.8 393 56.2
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 2.3e-114 416.8 395 52.2
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 3.0e-114 416.4 488 47.5
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 4.3e-113 412.5 432 50.9
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.3e-112 411.0 497 47.1
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.1e-91 340.5 497 41.0
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 4.8e-88 329.3 634 36.1
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 3.4e-86 323.2 517 40.8
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 4.5e-86 322.8 436 40.8
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.9e-84 317.4 337 49.0
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 3.2e-84 316.6 337 49.0
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 2.2e-80 303.9 256 60.9
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.1e-79 301.6 262 58.8
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 8.5e-77 292.0 518 36.7
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 4.2e-76 289.7 261 60.2
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 4.7e-59 233.0 486 31.5
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 5.2e-58 229.6 367 39.2
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 1.2e-57 228.4 208 55.8
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 3.3e-52 210.3 340 39.7
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 2.8e-51 207.2 193 57.0
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 8.0e-51 205.7 341 39.3
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 4.9e-48 196.4 199 52.3
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.6e-46 191.4 206 49.0
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 4.3e-36 156.8 174 46.6
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 5.6e-36 156.4 173 50.3
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.3e-32 145.2 252 32.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-30 137.1 337 29.4
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.6e-27 127.1 484 27.7
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.7e-22 110.9 114 43.9
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 8.6e-21 105.9 84 58.3
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 5.4e-15 86.7 96 43.8
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 3.0e-13 80.9 155 34.8


User provided reference genes

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